Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,953,136 – 2,953,256 |
Length | 120 |
Max. P | 0.813417 |
Location | 2,953,136 – 2,953,256 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.06 |
Mean single sequence MFE | -21.04 |
Consensus MFE | -18.36 |
Energy contribution | -18.92 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -1.39 |
Structure conservation index | 0.87 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813417 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2953136 120 + 22224390 GCUCUCGCUUCGUCCGCAUCUCGGCAUACCGCUCAACUACCUCAUCUGCCGUUCUUGGCCAUUCAUUCCCAUUCAUUCAACGCUUCAUUGCUGCGGUAAUUGCUUCCAAAUGCUUAAACG ((....)).......((((...((((((((((...............((((....))))......................((......)).))))))..)))).....))))....... ( -22.70) >DroSec_CAF1 330610 120 + 1 CCUCUCGCUCCGUCCGCACCUCGGCAUACCGCUCAAGUACCUCAUCUGCCGUUCUCGGCCAUUCAUUCCCAUUCAUUCAACGCUUCAUUGCUGCGGUAAUUGCUUCCAAAUGCUUAAACG ...............(((....((((((((((...............((((....))))......................((......)).))))))..))))......)))....... ( -22.40) >DroSim_CAF1 296442 120 + 1 CCUCUCGCUCCGUCCGCACCUCGGCAUACCGCUCAACUACCUCAUCUGCCGUUCUCGGCCAUUCAUUCCCAUUCAUUCAACGCUUCAUUGCUGCGGUAAUUGCUUCCAAAUGCUUAAACG ...............(((....((((((((((...............((((....))))......................((......)).))))))..))))......)))....... ( -22.40) >DroEre_CAF1 359730 108 + 1 CCUCUCGC------------UCGACAUACCGCUCAACUACCUCAUCUGCCGUUCUUGGCCAUUCAUUCCCAUUCAUUCAACGCUUCAUUGCUGCGGUAAUUGCUUCCAAAUGCUUAAACG ........------------......((((((...............((((....))))......................((......)).))))))...((........))....... ( -16.70) >DroYak_CAF1 340692 116 + 1 CCUUUCGCU----CCGCACCUCGGCAUACCGCUCAACUACCUCAUCUGCCGUUCUUGGCCAUUCAUUCCCAUUCAUUCAACGCUUCAUUGCUGCGGUAAUUGCUUCCAAAUGCUUAAACG .........----..(((....((((((((((...............((((....))))......................((......)).))))))..))))......)))....... ( -21.00) >consensus CCUCUCGCU_CGUCCGCACCUCGGCAUACCGCUCAACUACCUCAUCUGCCGUUCUUGGCCAUUCAUUCCCAUUCAUUCAACGCUUCAUUGCUGCGGUAAUUGCUUCCAAAUGCUUAAACG ...............(((....((((((((((...............((((....))))......................((......)).))))))..))))......)))....... (-18.36 = -18.92 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:19 2006