Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,946,964 – 2,947,062 |
Length | 98 |
Max. P | 0.745232 |
Location | 2,946,964 – 2,947,062 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 90.88 |
Mean single sequence MFE | -23.14 |
Consensus MFE | -17.76 |
Energy contribution | -17.92 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.77 |
Structure conservation index | 0.77 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.745232 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2946964 98 - 22224390 UGUGUAGUAAGUGAGGGAGACCGCAGCACAAUAAUGG-GGAAAAAGGAAAGCAAAGUAGGAAAUUAUGAUAUCAUCUUUAUGACGCCAUUAUGGUCGCU ..............((....))((.((...(((((((-(..(.(((((.......((((....)))).......))))).)..).))))))).)).)). ( -20.04) >DroSec_CAF1 324059 96 - 1 U--GUUGUGAGCGAGGGAGACCGCUGCACAAUAAUGG-GGAAAAAGGAAAGCAAAGUAGGAAAUUAUGAUAUCAUCUUUAUGACGCCAUUAUGGUCGCU .--...(((((((.((....))..)))...(((((((-(..(.(((((.......((((....)))).......))))).)..).)))))))..)))). ( -22.24) >DroSim_CAF1 290521 96 - 1 U--GUUGUGAGCGAGGGAGACCGCAGCACAAUAAUGG-GGAAAAAGGAAAGCAAAGUAGGAAAUUAUGAUAUCAUCUUUAUGACGCCAUUAUGGUCGCU .--...((((((..((....))...))...(((((((-(..(.(((((.......((((....)))).......))))).)..).)))))))..)))). ( -22.14) >DroEre_CAF1 352957 90 - 1 C--GUA----GUGAGGGAGACCG---CACAAUAAUGGGGGAAAAAGGAAAGCAAAGUAGGAAAUUAUGAUAUCAUCUUUAUGACGCCAUUAUGGUCGCU .--...----(((.((....)).---))).(((((((.(..(.(((((.......((((....)))).......))))).)..).)))))))....... ( -22.04) >DroYak_CAF1 334146 88 - 1 C--GUA----GUGCGGGAGACCG---CACAAUAAUGG-CGAAAAAGGAAAGCAAAGUAGGAAAUUAUGAUAUCAUCUUUAUGACGCCAUUAUGGUCGC- .--...----((((((....)))---))).(((((((-((...(((((.......((((....)))).......)))))....)))))))))......- ( -29.24) >consensus U__GUAGU_AGUGAGGGAGACCGC_GCACAAUAAUGG_GGAAAAAGGAAAGCAAAGUAGGAAAUUAUGAUAUCAUCUUUAUGACGCCAUUAUGGUCGCU ..........((((((....))........(((((((.(..(.(((((.......((((....)))).......))))).)..).)))))))..)))). (-17.76 = -17.92 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:18 2006