Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,930,722 – 2,930,828 |
Length | 106 |
Max. P | 0.971610 |
Location | 2,930,722 – 2,930,828 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.43 |
Mean single sequence MFE | -29.02 |
Consensus MFE | -20.90 |
Energy contribution | -21.14 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -2.51 |
Structure conservation index | 0.72 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971610 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2930722 106 - 22224390 ACUUCCAACG-----------A---CCGACUCCCCAACUUCCUCUAACUCUUUCCGAUCUUCAAAGACGCACCGGGGGCCCACCCCGAAUAAUGGGCUCCCCCACUGGAGGAUCUGGAAA ..........-----------.---........(((...(((((((........((.(((....)))))....(((((((((..........)))))))))....)))))))..)))... ( -30.60) >DroSec_CAF1 313412 104 - 1 ACUCACAACG-----------A---CCGACUCC-CAACUUCCUCUAACUCUUCCCGAUCUUCAAAGAAGCAACGG-GGCCCACCCCGAAUAAUGGGCUCCCCCAGUGGAGGAUCUGGAAA ..........-----------.---........-................((((.(((((((..........(((-((....))))).....((((....))))...))))))).)))). ( -28.50) >DroSim_CAF1 283155 98 - 1 ACUCACAACG-----------A---CCG-------AACUUCCUCUAACUCUUCCCGAUCUUCAAAGGAGCACCGG-GGCCCACCCCGAAUAAUGGGCUCCCCCAGUGGAGGAUCUGGAAA ..........-----------.---...-------...............((((.(((((((...((....))((-((((((..........)))))))).......))))))).)))). ( -29.10) >DroEre_CAF1 339434 118 - 1 ACUUUCAUAAUUCCUGAACCGACCGCCCACCCC-CAACUUCCUUUAACUCUUCCCGAUCUUCAAAGAAGCACCGG-GGCCCACCCCGAAUAGUGGGUCCCCCCACUGGAGGAUCUGGAAA .................................-................((((.(((((((..........(((-((....)))))..(((((((....)))))))))))))).)))). ( -33.90) >DroYak_CAF1 322660 103 - 1 ACUUCCAUGG-----------A---CUCCCCCC-CAACUUUCUCUAACUCUUCCCGAUCUUCAAAGAAGCACCAG-GGCCCACCCCGAAUAGCGG-UUCCCCCACUGGAGGAUCUGGAAA .......(((-----------.---.......)-))..............((((.(((((((............(-((.....)))...(((.((-.....)).)))))))))).)))). ( -23.00) >consensus ACUUACAACG___________A___CCGACCCC_CAACUUCCUCUAACUCUUCCCGAUCUUCAAAGAAGCACCGG_GGCCCACCCCGAAUAAUGGGCUCCCCCACUGGAGGAUCUGGAAA ..................................................((((.(((((((..........(((.((....)))))......(((....)))....))))))).)))). (-20.90 = -21.14 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:17 2006