Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,924,670 – 2,924,765 |
Length | 95 |
Max. P | 0.704498 |
Location | 2,924,670 – 2,924,765 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 67.30 |
Mean single sequence MFE | -24.63 |
Consensus MFE | -12.75 |
Energy contribution | -16.25 |
Covariance contribution | 3.50 |
Combinations/Pair | 1.25 |
Mean z-score | -1.57 |
Structure conservation index | 0.52 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704498 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2924670 95 - 22224390 UCUCUACGUUCGUGUGGCGCUCCAUGUGUGCGCUGCACUGGCAGAAAACAAUUGGUGG-UUCUUAAAAGCG-------GAAUUUGGGACAUACUAUCA-----UCAUA .......((..(((..((((.........))))..)))..))..........((((((-((((((((....-------...)))))))...)))))))-----..... ( -26.30) >DroSec_CAF1 310593 101 - 1 UCUCUCCGUUCAUGUGGCGCUCCAUGUGUGCGCUG------CAGAAAACUACUAGUGA-CUACUACUAGUCACUACUACUGCUAGUGACGUACUAUCAUACUAUCACA ........(((.((..((((.........))))..------)))))......((((((-(((....))))))))).........((((.(((......)))..)))). ( -27.30) >DroSim_CAF1 280172 107 - 1 UCUCUCCGUUCAUGUGGCGCUCCAUGUGUGCGCUGCACUCGCAGAAAACUACUAGUAG-CUACUACUAGUUACUACUACUACUAGUGACACACUAUCAUACUAUCACA ..(((.((....((..((((.........))))..))..)).)))....(((((((((-.......((((....)))))))))))))..................... ( -24.91) >DroYak_CAF1 319719 89 - 1 UCUCGCCGUUCGUGUGGCUCUCCAUGUGUGCGCUGCACUCGCAAA-AACUAUUGGUGGACUCUUAAA-CAG-------UAUUUUGUGGCAUAA----------UAUUU ....(((....(((..((.(.........).))..)))..(((((-(..(((((.............-)))-------)))))))))))....----------..... ( -20.02) >consensus UCUCUCCGUUCAUGUGGCGCUCCAUGUGUGCGCUGCACUCGCAGAAAACUACUAGUGG_CUACUAAAAGUG_______CAACUAGUGACAUACUAUCA_____UCACA ......(((.((..(((....)))..)).)))((((....))))........(((((..(((((((((((.......)))))))))))..)))))............. (-12.75 = -16.25 + 3.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:16 2006