Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,922,186 – 2,922,293 |
Length | 107 |
Max. P | 0.986431 |
Location | 2,922,186 – 2,922,293 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 90.30 |
Mean single sequence MFE | -22.87 |
Consensus MFE | -20.85 |
Energy contribution | -20.85 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.09 |
Structure conservation index | 0.91 |
SVM decision value | 2.04 |
SVM RNA-class probability | 0.986431 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2922186 107 + 22224390 --CAAUUUUUCACCACCCAU---GCCACUAUGGCCUUGCAGUGAUUAAUUUCUAUUAUUAUGACACUGAUUAGGUCCACUUACAGGCUCAUUACAGUCAUGAGCACAUAAUA --.((((..((((....((.---(((.....)))..))..))))..)))).....(((((((...(((..((((....)))))))((((((.......)))))).))))))) ( -23.10) >DroPse_CAF1 421745 112 + 1 ACCAAUUUCUCCCAAGCCAACUACCCAACUUGGCCUUGCAGUGAUUAAUUUCUAUUAUUAUGACACUGAUUAGGUCCACUUACAGGCUCAUUACAGUCAUGAGCACAUAAUG ..............................((((((..(((((..((((.......))))...)))))...))).))).......((((((.......))))))........ ( -20.80) >DroSim_CAF1 277667 107 + 1 --CCAUUUUUCACCACCCAU---GCCACUGUGGCCUUGCAGUGAUUAAUUUCUAUUAUUAUGACACUGAUUAGGUCCACUUACAGGCUCAUUACAGUCAUGAGCACAUAAUA --..................---......(((((((..(((((..((((.......))))...)))))...))).))))......((((((.......))))))........ ( -24.00) >DroEre_CAF1 333072 107 + 1 --CCUUUUUGCGCCACCCAU---GCCAUUAUGGCCUUGCAGUGAUUAAUUUCUAUUAUUAUGACACUGAUUAGGUCCACUUACAGGCUCAUUACAGUCAUGAGCACAUAAUA --..................---...((((((((((..(((((..((((.......))))...)))))...))))..........((((((.......)))))).)))))). ( -22.30) >DroYak_CAF1 317239 107 + 1 --CCCUUUUUCGCCACCAAU---GCCAUUAUGGCCUUGCAGUGAUUAAUUUCUAUUAUUAUGACACUGAUUAGGUCCACUUACAGGCUCAUUACAGUCAUGAGCACAUAAUA --.......((((...(((.---(((.....))).)))..))))...........(((((((...(((..((((....)))))))((((((.......)))))).))))))) ( -23.60) >DroPer_CAF1 443038 112 + 1 ACCAAUUUCUCCCAAGCCAACUACCCAGCUUGGCCUUGCAGUGAUUAAUUUCUAUUAUUAUGACACUGAUUAGGUCCACUUACAGGCUCAUUACAGUCAUGAGCACAUAAUG ...........((((((..........))))))(((..(((((..((((.......))))...)))))...)))...........((((((.......))))))........ ( -23.40) >consensus __CAAUUUUUCACCACCCAU___GCCACUAUGGCCUUGCAGUGAUUAAUUUCUAUUAUUAUGACACUGAUUAGGUCCACUUACAGGCUCAUUACAGUCAUGAGCACAUAAUA ..............................((((((..(((((..((((.......))))...)))))...))).))).......((((((.......))))))........ (-20.85 = -20.85 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:15 2006