Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,907,306 – 2,907,398 |
Length | 92 |
Max. P | 0.683288 |
Location | 2,907,306 – 2,907,398 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 97.60 |
Mean single sequence MFE | -14.36 |
Consensus MFE | -12.30 |
Energy contribution | -12.30 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.53 |
Structure conservation index | 0.86 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683288 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2907306 92 + 22224390 GGAAAAAAAAUAAAAUAAAACGCCAGGAUAAUCAAUAAAUGAAAUUCAAUUUGCUGCGCCAUUUGCGCAGACAGUCAACAACAACGGAGAUA ....................(.((.((((..(((.....))).))))...(((((((((.....)))))).)))...........)).)... ( -14.70) >DroSec_CAF1 293946 91 + 1 GGAAA-AAAAUAAAAUAAAACGCCAGGAUAAUCAAUAAAUGAAAUUCAAUUUGCUGCGCCAUUUGCGCAGACAGUCAACAACAACGGAGAUA .....-..............(.((.((((..(((.....))).))))...(((((((((.....)))))).)))...........)).)... ( -14.70) >DroSim_CAF1 263085 92 + 1 GGAAAAAAAAUAAAAUAAAACGCCAGGAUAAUCAAUAAAUGAAAUUCAAUUUGCUGCGCCAUUUGCGCAGACAGUCAACAACAACGGAGGUA .....................(((.((((..(((.....))).))))...(((((((((.....)))))).)))..............))). ( -15.90) >DroEre_CAF1 317999 90 + 1 GGAAA--AAAUAAAAUAAAACGCCAGGAUAAUCAAUAAAUGAAAUUCAAUUUGCUGCGCCAUUUGCGCAGACAGUCAACAACAACAGAGAUA .....--..................((((..(((.....))).))))...(((((((((.....)))))).))).................. ( -12.30) >DroYak_CAF1 302466 91 + 1 GGAAA-AAAAUAAAAUAAAACGCCAGGAUAAUCAAUAAAUGAAAUUCAAUUUGCUGCGCCAUUUGCGCAGACAGUCAACAACAACGCAGAUA .....-...............((..((((..(((.....))).))))...(((((((((.....)))))).)))...........))..... ( -14.20) >consensus GGAAA_AAAAUAAAAUAAAACGCCAGGAUAAUCAAUAAAUGAAAUUCAAUUUGCUGCGCCAUUUGCGCAGACAGUCAACAACAACGGAGAUA .........................((((..(((.....))).))))...(((((((((.....)))))).))).................. (-12.30 = -12.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:10 2006