Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,907,053 – 2,907,147 |
Length | 94 |
Max. P | 0.669086 |
Location | 2,907,053 – 2,907,147 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 80.94 |
Mean single sequence MFE | -27.45 |
Consensus MFE | -20.20 |
Energy contribution | -20.65 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.20 |
Mean z-score | -1.41 |
Structure conservation index | 0.74 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.669086 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2907053 94 - 22224390 AAAAUCG----------GUGAAAAAGCGGGCGGGGCCGGCC-GGCAAUUUAUGGCCCAGCGGAAGGUGAAUUCAAUUUCUGUUGCA--GGCCUAACGAAAGUUUUGA .......----------.....(((((...(((((((((((-(........)))))(((((((((.((....)).)))))))))..--)))))..))...))))).. ( -32.10) >DroSec_CAF1 293676 94 - 1 AAAAUCG----------GAGGAAAAGCGGGCGGGGCCGGCC-GGCAAUUUAUGGCCCAGCGGAAGGUGAAUUCAAUUUCUGUUGCA--GGCCUAACGAAAGUUUUGA .......----------.....(((((...(((((((((((-(........)))))(((((((((.((....)).)))))))))..--)))))..))...))))).. ( -32.10) >DroSim_CAF1 262815 94 - 1 AAAAUCG----------GAGGAAAAGCGGGCGGGGCCGGCC-GGCAAUUUAUGGCCCAGCGGAAGGUGAAUUCAAUUUCUGUUGCA--GGCCUAACGAAAGUUUUGA .......----------.....(((((...(((((((((((-(........)))))(((((((((.((....)).)))))))))..--)))))..))...))))).. ( -32.10) >DroEre_CAF1 317733 104 - 1 AAAAUCGGUGAAAAGCGGGGGAAAAGCGGGCGAGGCCAGUC-GGCAAUUUAUGGCCCAUCGGAAGGUGAAUUCAAUUUCUGUUGCA--GGCCUAACGAAAGUUUUGA ......(((.....((((.(((((...((((.(.(((....-)))......).))))(((....)))........))))).)))).--.))).(((....))).... ( -28.80) >DroYak_CAF1 302213 93 - 1 AAAAUCG-----------GGGAAAAGCGGGCGGGGCCGGUC-GGCAAUUUAUGGCCCAUCGGAAGGUGAAUUCAAUUUCUGUUGCA--AGCCUAACGAAAGUUUUGA .......-----------....(((((((((.(.(((....-)))......).)))).(((..((((.....((((....))))..--.))))..)))..))))).. ( -25.50) >DroPer_CAF1 421648 80 - 1 -------------------------GC-GGCGAAGAAAAUUGUUCAAUUUAUGGCCUAACAGAAGGUAAAUUCAAUUUUCCUUACACUGGCCU-ACGGAAGUUUUGA -------------------------..-.((((......))))((((.....((((......((((.(((......))))))).....)))).-((....)).)))) ( -14.10) >consensus AAAAUCG__________GAGGAAAAGCGGGCGGGGCCGGCC_GGCAAUUUAUGGCCCAGCGGAAGGUGAAUUCAAUUUCUGUUGCA__GGCCUAACGAAAGUUUUGA ......................(((((...((..(((.....))).......(((((((((((((.((....)).)))))))))....))))...))...))))).. (-20.20 = -20.65 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:09 2006