Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,902,706 – 2,902,806 |
Length | 100 |
Max. P | 0.990623 |
Location | 2,902,706 – 2,902,806 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 77.26 |
Mean single sequence MFE | -35.42 |
Consensus MFE | -18.18 |
Energy contribution | -19.90 |
Covariance contribution | 1.72 |
Combinations/Pair | 1.11 |
Mean z-score | -2.58 |
Structure conservation index | 0.51 |
SVM decision value | 2.22 |
SVM RNA-class probability | 0.990623 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2902706 100 + 22224390 CAAAUAUGGAAUCAUAUGAAGCGCCAGUGGUCGCUGCUAGUUGAUGUUGCUGCUUGCUG---------UUUGCAAUAGUUGCUGGUUAGCUG-CAACUGUUGCAGCUGCC ...(((((....)))))..((((((...)).))))((((((...((((((.((.....)---------)..))))))...))))))((((((-((.....)))))))).. ( -32.50) >DroSec_CAF1 289467 96 + 1 CAAAUAUGGAAUCAUAUGAAGCGCCAGUGGUUGCUGCUAGUUGAUGUUGCUGCUUGCU-------------GCAAUAGUUGCUGGUUAGCUG-CAACUGUUGCAGCUGCC ...(((((....))))).((((((.(((....))))).(((.......)))))))(((-------------(((((((((((.((....)))-))))))))))))).... ( -33.20) >DroEre_CAF1 313268 94 + 1 CAAAUAUGGAAUCAUAUGAAGCGCCAGUGGUUGCGGCCAGUUGAUGUUGCUGGUUG----------------CAAUAGUUGCUGGUUAGCUGGCAACUGUUGCAGCUGCC ...(((((....)))))..((((.(((((((....)))).))).))))((.(((((----------------((((((((((..(....)..))))))))))))))))). ( -38.20) >DroYak_CAF1 297907 102 + 1 CAAAUAUGGAAUCAUAUGGAGCGCCAGUGGUUGCUGCCAGUUGAUGUUGCUGGUUGCAA-------GAGUUGCAAUAGUUGCUGGUUAGCUG-CAACUGUUGCAGCUGCC .........((((((.(((....)))))))))((.((((((.......)))))).))..-------.(((((((((((((((.((....)))-))))))))))))))... ( -40.90) >DroAna_CAF1 457472 91 + 1 CAAAUAUGGAAUCAUAUGUAGCGCCAGUUG---------GCUGCUGCUGCUGCUUGCAACUAGCCAGGCUUGCAACAAACGGCGGC----------GCGUUGCAGCUGCC ...(((((....)))))((((((((....)---------)).)))))(((.((((((.....).)))))..)))......((((((----------........)))))) ( -32.30) >consensus CAAAUAUGGAAUCAUAUGAAGCGCCAGUGGUUGCUGCCAGUUGAUGUUGCUGCUUGCA___________UUGCAAUAGUUGCUGGUUAGCUG_CAACUGUUGCAGCUGCC ...(((((....)))))...(((.((((....(((((((((...((((((.....................))))))...))))).)))).....)))).)))....... (-18.18 = -19.90 + 1.72)
Location | 2,902,706 – 2,902,806 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 77.26 |
Mean single sequence MFE | -27.80 |
Consensus MFE | -10.97 |
Energy contribution | -12.42 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.00 |
Mean z-score | -2.27 |
Structure conservation index | 0.39 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.936133 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2902706 100 - 22224390 GGCAGCUGCAACAGUUG-CAGCUAACCAGCAACUAUUGCAAA---------CAGCAAGCAGCAACAUCAACUAGCAGCGACCACUGGCGCUUCAUAUGAUUCCAUAUUUG ....(((((...(((((-(.........)))))).((((...---------..)))))))))...........(.((((.((...)))))).)(((((....)))))... ( -26.70) >DroSec_CAF1 289467 96 - 1 GGCAGCUGCAACAGUUG-CAGCUAACCAGCAACUAUUGC-------------AGCAAGCAGCAACAUCAACUAGCAGCAACCACUGGCGCUUCAUAUGAUUCCAUAUUUG (((.(((((((.(((((-(.........)))))).))))-------------)))..((.((...........)).))..........)))..(((((....)))))... ( -26.40) >DroEre_CAF1 313268 94 - 1 GGCAGCUGCAACAGUUGCCAGCUAACCAGCAACUAUUG----------------CAACCAGCAACAUCAACUGGCCGCAACCACUGGCGCUUCAUAUGAUUCCAUAUUUG ((((((((...))))))))(((...((((......(((----------------(..((((.........))))..))))...)))).)))..(((((....)))))... ( -26.20) >DroYak_CAF1 297907 102 - 1 GGCAGCUGCAACAGUUG-CAGCUAACCAGCAACUAUUGCAACUC-------UUGCAACCAGCAACAUCAACUGGCAGCAACCACUGGCGCUCCAUAUGAUUCCAUAUUUG ((.((((((((.(((((-(.........)))))).)))))....-------((((..((((.........))))..))))........)))))(((((....)))))... ( -28.00) >DroAna_CAF1 457472 91 - 1 GGCAGCUGCAACGC----------GCCGCCGUUUGUUGCAAGCCUGGCUAGUUGCAAGCAGCAGCAGCAGC---------CAACUGGCGCUACAUAUGAUUCCAUAUUUG (((...(((((((.----------((....)).))))))).((((((((.(((((........))))))))---------))...))))))..(((((....)))))... ( -31.70) >consensus GGCAGCUGCAACAGUUG_CAGCUAACCAGCAACUAUUGCAA___________AGCAAGCAGCAACAUCAACUAGCAGCAACCACUGGCGCUUCAUAUGAUUCCAUAUUUG (((.(((((...........(((....))).....((((..............)))))))))..............((........)))))..(((((....)))))... (-10.97 = -12.42 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:05 2006