Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 394,844 – 394,947 |
Length | 103 |
Max. P | 0.988068 |
Location | 394,844 – 394,947 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 72.92 |
Mean single sequence MFE | -26.12 |
Consensus MFE | -16.12 |
Energy contribution | -16.30 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.27 |
Mean z-score | -2.14 |
Structure conservation index | 0.62 |
SVM decision value | 2.10 |
SVM RNA-class probability | 0.988068 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 394844 103 + 22224390 AUUGCUUUUGACCGGAUUUUAAGCUAAGAAAAAGCGGCCAAAGCGAAGAAUGUUCAAAUUGUGGUCAAUUAUGUCCAAGUUGUUAAAUAUGCAGCUAGACUGA- .......(((((((.(.(((.(((.........((.......)).......))).))).).)))))))....(((..((((((.......)))))).)))...- ( -20.09) >DroSec_CAF1 6536 99 + 1 AUUGCUUUUGACCGGAUUUCAAGCUA----AAGCCGGCCAAAGCGAAGAAUGUGAAAAUUGUGGUCAAGUAUGGCCAAGUUGUUAAAUAUGCAGCUAGACUGA- .(((((((.(.((((.(((......)----)).))))).)))))))...............((((((....))))))((((((.......)))))).......- ( -25.30) >DroEre_CAF1 6648 89 + 1 GCUGCAUUUGACCGGACUUUGUGCUAAGAAAAA--------AC---CG---GCCAAAGUCGUGGUCUAAUAUGGCCAAGUCGCUAAAUACGCAGCUUGACUGA- ((((((((.((((((((((((.(((........--------..---.)---))))))))).))))).))).((((......)))).....)))))........- ( -30.50) >DroYak_CAF1 1370 96 + 1 AUUGCAUUUGACCGGAUUUCCAGCUAAGAAAAA--------AAAAACGAAUGCGAGAAUCGUGGUCAAAUAUAGUCAAGUCGUUAAAUUUGCAGCUUGACUGCA ..((((((((((((((((..(.((.........--------..........)))..)))).)))))))))..((((((((.((.......)).))))))))))) ( -28.61) >consensus AUUGCAUUUGACCGGAUUUCAAGCUAAGAAAAA________AGCGAAGAAUGCGAAAAUCGUGGUCAAAUAUGGCCAAGUCGUUAAAUAUGCAGCUAGACUGA_ ......(((((((((((((...((...........................))..))))).))))))))..(((.((((((((.......)))))))).))).. (-16.12 = -16.30 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:17 2006