Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 26,364 – 26,484 |
Length | 120 |
Max. P | 0.918733 |
Location | 26,364 – 26,484 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -43.02 |
Consensus MFE | -37.36 |
Energy contribution | -37.18 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.09 |
Mean z-score | -2.43 |
Structure conservation index | 0.87 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.918733 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 26364 120 + 22224390 GCCUUCCGUUCCGGUGAUAAGUAUCGCCGCAAGCUGGCGGAUCUGGAAUCACAGCUGGUGCUGGCAACGCCCAAUUUAGUGUUGCGCCUGGGGAACAAGGCAAAUAAUAAAACCAUAACC (((((..(((((((((((....)))))).......(((.............((((....))))(((((((........))))))))))...))))))))))................... ( -42.30) >DroSec_CAF1 13531 120 + 1 GCCUUUCGUUCCGGUGAUAAGUAUCGCCGUAAGCUGGCGGAUCUGGAAUCACAGCUGGUGCUGGCAACGCCCAAUUUAGUGUUGCGCCUGGGGAACAAGGCAAAUAAUAAAACCAUAACC (((((..(((((((((((....)))))).......(((.............((((....))))(((((((........))))))))))...))))))))))................... ( -42.30) >DroSim_CAF1 13825 120 + 1 GCCUUUCGUUCCGGUGAUAAGUAUCGCCGUAAGCUGGCGGAUCUGGAAUCACAGCUGGUGCUGGCAACGCCCAAUUUAGUGUUGCGCCUGGGGAACAAGGCAAAUAAUAAAACCAUAACC (((((..(((((((((((....)))))).......(((.............((((....))))(((((((........))))))))))...))))))))))................... ( -42.30) >DroYak_CAF1 8026 120 + 1 GGCUUCCGGUCCGGCGAAAAAUAUCGCCGCAAGCUGGCGGAUCUGGAAUCACAGCUGGUGCUGGCAACGCCCAAUUUGGUGUUCCGCCUGGGAAACAAGGCAAAUAAUAAAACCAUAACC (((((((((((((((((......)))))((......))))).))))).....))))(((...((.((((((......))))))))((((.(....).))))..........)))...... ( -45.20) >consensus GCCUUCCGUUCCGGUGAUAAGUAUCGCCGCAAGCUGGCGGAUCUGGAAUCACAGCUGGUGCUGGCAACGCCCAAUUUAGUGUUGCGCCUGGGGAACAAGGCAAAUAAUAAAACCAUAACC ...(((((.(((((((((....))))))((......)))))..)))))...((((....))))(((((((........)))))))((((.(....).))))................... (-37.36 = -37.18 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:05 2006