Locus 1

Sequence ID X_DroMel_CAF1
Location 14,307 – 14,427
Length 120
Max. P 0.539719
window1

overview

Window 1

Location 14,307 – 14,427
Length 120
pre Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -48.87
Consensus MFE -46.52
Energy contribution -46.97
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -1.53
Structure conservation index 0.95
SVM decision value 0.01
SVM RNA-class probability 0.539719
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14307 120 - 22224390
CCGUGGCAUCGAAUGGCGUGGGAUGUGCGGAGGUGGGAGGCUCCAUUCUGGAUAUCGGAGGAUCUGCUGCAGAUGCGGCUAUAGCCACCAUGUUGUGCGAAGGAGUGAUGCUGCCCCACA
..(..((((((.(..(((((((((((.(((((.((((....))))))))).)))))...((....(((((....))))).....)).))))))..).(....)..))))))..)...... ( -47.60)
>DroSec_CAF1 1447 120 - 1
CCGUGGCAUCGAAUGGCGUGGGAUGUGCAGAGGUUGGAGGCUCCAUUCUGGAUAUCGGAGGAUCUGCUGCAGAUGCGGCUAUAGCCACCAUGUUGUGCGAAGGCGUAAUGCUGCCCCACA
..((((..(((.(..(((((((((((.(((((..(((.....)))))))).)))))...((....(((((....))))).....)).))))))..).))).((((......)))))))). ( -48.90)
>DroSim_CAF1 1519 120 - 1
CCGUGGCAUCGAAUGGCGUGGGAUGUGCGGAGGUUGGAGGCUCCAUUCUGGAUAUCGGAGGAUCUGCUGCAGAUGCGGCUAUAGCCACCAUGUUGUGCGAAGGCGUGAUGCUGCCCCACA
..(..((((((.(..(((((((((((.(((((..(((.....)))))))).)))))...((....(((((....))))).....)).))))))..)((....)).))))))..)...... ( -50.10)
>consensus
CCGUGGCAUCGAAUGGCGUGGGAUGUGCGGAGGUUGGAGGCUCCAUUCUGGAUAUCGGAGGAUCUGCUGCAGAUGCGGCUAUAGCCACCAUGUUGUGCGAAGGCGUGAUGCUGCCCCACA
..(..((((((.(..(((((((((((.(((((...((.....)).))))).)))))...((....(((((....))))).....)).))))))..)((....)).))))))..)...... (-46.52 = -46.97 +   0.45) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:53 2006