Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 724,614 – 724,725 |
Length | 111 |
Max. P | 0.993405 |
Location | 724,614 – 724,725 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 88.23 |
Mean single sequence MFE | -34.44 |
Consensus MFE | -29.42 |
Energy contribution | -29.90 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.19 |
Mean z-score | -2.34 |
Structure conservation index | 0.85 |
SVM decision value | 2.40 |
SVM RNA-class probability | 0.993405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 724614 111 - 1281640 UAAGGUUAGUUGGCGGAAGAUGAAAGCGAUU--CGGCACGGUGCAGUUCUGCAGCUGCGUUGUGUCGUUAAGCAUAUCGUGGCAACGGAAUCUGAAAAUAAAGGAAGAACCAA ...((((.((((.((...((((...((....--((((((..((((((......))))))..))))))....)).)))).)).))))....(((........)))...)))).. ( -35.60) >DroSec_CAF1 12852 113 - 1 UAAUGGUAGUUGGCGGAAGAUGAAAGCGAUUUGCGGCACGGUGCAGUUCUGCAGCUGCGUUGUGUCGUAAAGCAUAUCGUGGCAACGGAAUCUGAAAAUAAAGGAAGGACCGA ...((((.((((.((...((((...((...(((((((((..((((((......))))))..))))))))).)).)))).)).))))....(((........)))....)))). ( -37.40) >DroSim_CAF1 1208 113 - 1 UAAUGGUAGUUGGCGGAAGAUGAAAGCGAUUUGCGGCACGGUGCAGUUCUGCAGCUGCGUUGUGUCGUAAAGCAUAUCGUGGCAACGGAAUCUGAAAAUAAAGGAAGGACCGA ...((((.((((.((...((((...((...(((((((((..((((((......))))))..))))))))).)).)))).)).))))....(((........)))....)))). ( -37.40) >DroEre_CAF1 13958 112 - 1 UAAGGGUAGUUGGCGGAAGAUGAAAGCGACUUGCUUCACAGUGCAGUUCUGCAGCUGCGUUGG-AUGUAAAGCAUAUCGCGGCAACGGAAUCUAAAAAUAAAGGACGGCCCAA ...((((.(((..(....)......((((..(((((.(((.((((((......))))))....-.))).)))))..))))(....).................))).)))).. ( -33.40) >DroYak_CAF1 18557 108 - 1 UAAGGGUAGUUGGCGGAAGAUAAAAGCUAUUUGCGCCGCAGUGCAGUUUUGCAGCUGCCUUGUAAUGUAAAGCAUAUCGCGGCAACGGAAUCUAAAAAUAAAGG-----CCAA ....(((..(((.....((((....((.....))(((((.(((..((((((((..(((...))).)))))))).))).)))))......)))).....)))..)-----)).. ( -28.40) >consensus UAAGGGUAGUUGGCGGAAGAUGAAAGCGAUUUGCGGCACGGUGCAGUUCUGCAGCUGCGUUGUGUCGUAAAGCAUAUCGUGGCAACGGAAUCUGAAAAUAAAGGAAGGACCAA ........((((.((...((((...((...(((((((((((((((((......))))))))))))))))).)).)))).)).))))................((.....)).. (-29.42 = -29.90 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:33 2006