Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 724,364 – 724,574 |
Length | 210 |
Max. P | 0.778934 |
Location | 724,364 – 724,457 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 91.89 |
Mean single sequence MFE | -14.18 |
Consensus MFE | -12.92 |
Energy contribution | -12.20 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.29 |
Mean z-score | -1.20 |
Structure conservation index | 0.91 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654044 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 724364 93 - 1281640 CACACCCCCCCCCCCCCCAGCAAUUACACACAUGUUGCAUUCCAUUUGAAUUCAAGCUGGCCAGACAAGUUGCCAGCAGCACACUCGUCCAAU ................(((((.....((....))(((.((((.....)))).))))))))...(((.((((((.....))).))).))).... ( -15.40) >DroSec_CAF1 12606 86 - 1 CACACUC-------CUCCAGCAAUUACACACAUGUUGCAUUCCAUUUGAAUUCAAGCUGGCCUGACAAGUUGCCAGCAGCACACUCGUCCAAU .......-------.....((.............(((.((((.....)))).)))((((((((....))..)))))).))............. ( -15.90) >DroSim_CAF1 962 86 - 1 CACACUC-------CUCCAGCAAUUACACACAUGUUGCAUUCCAUUUGAAUUCAAGCUGGCCAGACAAGUUGCCAGCAGCACACUCGUCCAAU .......-------..(((((.....((....))(((.((((.....)))).))))))))...(((.((((((.....))).))).))).... ( -15.20) >DroEre_CAF1 13712 86 - 1 CACACUC-------UUCCAGCAAUUACACACAUGUUGCAUUCCAUUUGAAUUUAAGCUGGCCAAACAAGUUGCCGGCAGCACACUCGUCCAAU .......-------.....(((((.........))))).................((((((..........))))))................ ( -13.90) >DroYak_CAF1 18311 86 - 1 CACACUC-------CUCCAUCAAUUACACACAUGUUGCAUUCCAUUUGAAUUCAAGCUGGCCAAACAAGUUGCUGGUAGCACACUCGUCCAAU .......-------(((((.(((((.......((((.....(((((((....)))).)))...))))))))).))).)).............. ( -10.51) >consensus CACACUC_______CUCCAGCAAUUACACACAUGUUGCAUUCCAUUUGAAUUCAAGCUGGCCAGACAAGUUGCCAGCAGCACACUCGUCCAAU ................................(((.((.......(((....)))((((((..........)))))).))))).......... (-12.92 = -12.20 + -0.72)
Location | 724,457 – 724,574 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.42 |
Mean single sequence MFE | -42.94 |
Consensus MFE | -30.98 |
Energy contribution | -31.86 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.14 |
Mean z-score | -1.90 |
Structure conservation index | 0.72 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778934 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 724457 117 + 1281640 GCACUGGGCGACUUCUCGAAAGGCGGUGAAAGCGGCAGGCGCUGCACCGUUUACACACAGUUUCUUGCUGGAAGGAACAACAUCCAGUUCCAGACCAGCACUUUCAUGU---CUGUUCAG ...(((((((((.....(((((((((((..((((.....)))).))))))...............((((((..(((((........)))))...)))))))))))..))---).)))))) ( -42.20) >DroSec_CAF1 12692 120 + 1 GCACUGGGCGCCUUCUCGGAAGGCGGUAAAAGCGGUAGCUACUGCACCGUUUACACACAGCUUCUUGCUGGAAGGAACAACAUCCAGUUCCAGACCAGCAGUUUCAUGUAGACAGUUCAG ...((((((((((((...))))))(((....(((((....))))))))(((((((...((((....(((((..(((((........)))))...)))))))))...))))))).)))))) ( -44.60) >DroSim_CAF1 1048 120 + 1 GCACUGGGCGCCUUCUCGGAAGGCGGUGAAAGCGGUAGCUACUGCACCGUUUACACACAGCUUCUUGCUGGAAGGAACAACAUCCAGUUCCAGACCAGCAGUUUCAUGUAGACAGUUCAG ...((((((((((((...)))))).(((.(((((((.((....))))))))).)))(((.....(((((((..(((((........)))))...))))))).....))).....)))))) ( -47.40) >DroEre_CAF1 13798 120 + 1 AUGCCGGGCGCCUUUUCGGGAGGCGGUGAGAGCGGCAGCCGCUGCACCGUUUACAAGCAGCAUCUUACUGGAAGGAAUAGCAUUCAGUUCCAGACCAAAUUUUCCAUGUAGACUGUUCAG .....(((((((((.....)))))((((..(((((...))))).))))(((((((............((((((.((((...))))..)))))).............))))))).)))).. ( -37.71) >DroYak_CAF1 18397 120 + 1 AGGCCGGGCGCCUUCUGGAGACGCGGUGAGCGCGGCAACCGCUGCACCGUUUAUAAACAGCAUCUCACGGGAAGGAACAACAUUCAGUUCCAGAACAGGAGUUCCUUGUAGACAGUUCAG .(((.....)))(((((((((.((((((((((.(....))))).))))(((....))).)).)))).))))).(((((........))))).(((((((....)))((....)))))).. ( -42.80) >consensus GCACUGGGCGCCUUCUCGGAAGGCGGUGAAAGCGGCAGCCGCUGCACCGUUUACACACAGCUUCUUGCUGGAAGGAACAACAUCCAGUUCCAGACCAGCAGUUUCAUGUAGACAGUUCAG ...(((((((((((.....)))))(((....(((((....))))))))(((((((..((((.....))))...(((((........)))))...............))))))).)))))) (-30.98 = -31.86 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:32 2006