Locus 95

Sequence ID 4_DroMel_CAF1
Location 722,160 – 722,264
Length 104
Max. P 0.682504
window149

overview

Window 9

Location 722,160 – 722,264
Length 104
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 81.27
Mean single sequence MFE -27.68
Consensus MFE -16.44
Energy contribution -17.75
Covariance contribution 1.31
Combinations/Pair 1.05
Mean z-score -2.02
Structure conservation index 0.59
SVM decision value 0.31
SVM RNA-class probability 0.682504
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 722160 104 - 1281640
AUCGCCAAAGUUCGUAGAAAAUUCAAUAAGGACCUCCGCAAGUUAGUCCACAAUCUGUCACAAGACUCAGUUUCUUGAGA---AGAGUUUUAAUUUGAACAAGGAAG-------------
....((...(((((...(((((((.....((((...(....)...))))........((.(((((.......))))).))---.)))))))....)))))..))...------------- ( -23.00)
>DroSec_CAF1 10086 117 - 1
AUCGCUAAAGUUCGUAGAAAAUUCAAUAAGGACCGUCGCAAGUUAGUCCAUAAUCUGACACAAGAUUCAGUUUCUUGAGA---AGAGUUUUAAUUUGAACAAGGAAGGAAAUUAUGGUUG
.........(((((...(((((((.....((((...(....)...))))...........(((((.......)))))...---.)))))))....))))).................... ( -23.30)
>DroEre_CAF1 11124 119 - 1
AUCGAUAAAGUUCGUUGAAAAUUCAAUAAGGACCGGCGCAAGCUGGUCCAGAAUCUAUCAUAAGAUUCAGUUUCUUGAAAUUAAAACUCUUAGUUUUAACAAGGAAGGAAGUU-UCGUUG
..(((......)))..((((.(((.....((((((((....)))))))).((((((......))))))..(((((((...(((((((.....)))))))))))))).))).))-)).... ( -39.70)
>DroYak_CAF1 15833 117 - 1
AUCGCUAAAGUGCGUUGAAAAUUCAAUAAGGACCGCCGCAAGUUUGUCCAGAAUCUGUCACAAGAUCCAGUUUCUUGAAA---AGAGUUUUAAUUUAAACAUAGAAGAAAGUUAGCGUUG
..((((((....((((((....)))))..((((...(....)...))))....(((((..(((((.......)))))...---...((((......))))))))).)....))))))... ( -24.70)
>consensus
AUCGCUAAAGUUCGUAGAAAAUUCAAUAAGGACCGCCGCAAGUUAGUCCAGAAUCUGUCACAAGAUUCAGUUUCUUGAAA___AGAGUUUUAAUUUGAACAAGGAAGGAAGUU_UCGUUG
.........(((((...(((((((.....((((...(....)...))))...........(((((.......))))).......)))))))....))))).................... (-16.44 = -17.75 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:29 2006