Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 679,214 – 679,414 |
Length | 200 |
Max. P | 0.974600 |
Location | 679,214 – 679,306 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 93.48 |
Mean single sequence MFE | -16.81 |
Consensus MFE | -14.77 |
Energy contribution | -14.99 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.09 |
Mean z-score | -2.15 |
Structure conservation index | 0.88 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.769422 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 679214 92 + 1281640 CAUACAUAUGGGUAUAUAAGAGUGGGAGUCAUUUGACAGGAGUUAAACAUGUAUACUUAGUAUGUACAUAAAGAAUUUUAAAAAUGAAAUAU ..((((((((((((((((.........(((....))).(........).)))))))))).))))))........((((((....)))))).. ( -15.30) >DroSec_CAF1 12834 92 + 1 CAUACAUAUGAGUAUAUAAGAGUGGCAGUAAUUUGACAGGAGUUACACAUAUAUACUUAGUAUGUACAUAUAAAAUUAUAAAACUGAAAUAU ..((((((((((((((((.(.(((((...............))))).).)))))))))).)))))).......................... ( -17.56) >DroSim_CAF1 11083 92 + 1 CAUACAUAUGAGUAUAUAAGAGUGGCAGUAAUUUGACAGGAGUUACACAUAUAUACUUAGUAUGUACAUAUAAAAUUAUAAAACUGAAAUAU ..((((((((((((((((.(.(((((...............))))).).)))))))))).)))))).......................... ( -17.56) >consensus CAUACAUAUGAGUAUAUAAGAGUGGCAGUAAUUUGACAGGAGUUACACAUAUAUACUUAGUAUGUACAUAUAAAAUUAUAAAACUGAAAUAU ..((((((((((((((((.(.(((((...............))))).).)))))))))).)))))).......................... (-14.77 = -14.99 + 0.23)
Location | 679,306 – 679,414 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 72.36 |
Mean single sequence MFE | -24.92 |
Consensus MFE | -9.96 |
Energy contribution | -9.56 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.31 |
Mean z-score | -2.20 |
Structure conservation index | 0.40 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974600 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 679306 108 + 1281640 GCAUCGCGAUCGCUGACCUACCAGGUCUGCUGCCCAACCGGCAGAAUCCCCAC--CCACAUUAACGACAAAUUCCUGUGUGAAAAAC--------GAAUGCAUGUCAAAAAAUAAAAC ((((.(((.(((..((((.....))))..(((((.....))))).........--.(((((....((.....))..))))).....)--------)).)))))))............. ( -23.30) >DroSec_CAF1 12926 86 + 1 G-----------------------GCCUGCUGCCCAACCGGCAGUAUCCCCACACGCACAUUAACGACAAAUUCACGUGUGAAAAAC--------GAAUGCAUGCCAAAAAA-AUAAA (-----------------------((.(((((((.....)))))))....((((((...................))))))......--------........)))......-..... ( -20.81) >DroSim_CAF1 11175 109 + 1 GCAUCGCGAUCGCUGCCCUAACAGGCCUGCUGCCCAACCGGCAGUAUCCCCACACGCACAUUGACGACAAAUUCACGUGUGAAAAAC--------GAAUGCAUGCCAAAAAA-AUAAA ((((.(((.(((..(((......))).(((((((.....)))))))....((((((....(((....))).....)))))).....)--------)).))))))).......-..... ( -29.80) >DroEre_CAF1 25523 116 + 1 GUAUUGCGAUCGCUGCACUACCAGUACUGCUGUCCAACCGGCAGUUCCCCCAGGCGCACAUAAACGAAAAAUUCACGUGUGACAAACAUACAUACAUAUGUAUGUCAAAAU--AUAAA ((((((((.((((((......))))(((((((......))))))).......)))))......................(((((.(((((......))))).))))).)))--))... ( -26.00) >DroYak_CAF1 14912 107 + 1 AUAUGGCGAUCGGUGCACUACCAGGGCUACUGCCAAACCGGUAGUUUC-CCAGGCGCAUAUUAACGAAAAAUUCACGUGUGGAAAAC--------AUUUGUAUAUCAAAAA--UUAAA (((((((....((((...)))).(((..((((((.....))))))..)-))..)).)))))....((......((.((((.....))--------)).))....)).....--..... ( -24.70) >consensus GCAUCGCGAUCGCUGCACUACCAGGCCUGCUGCCCAACCGGCAGUAUCCCCACACGCACAUUAACGACAAAUUCACGUGUGAAAAAC________GAAUGCAUGUCAAAAAA_AUAAA ............................((((((.....))))))...........(((((....((.....))..)))))..................................... ( -9.96 = -9.56 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:26 2006