Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 671,033 – 671,135 |
Length | 102 |
Max. P | 0.574184 |
Location | 671,033 – 671,135 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 77.36 |
Mean single sequence MFE | -32.12 |
Consensus MFE | -17.00 |
Energy contribution | -16.67 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.42 |
Mean z-score | -1.74 |
Structure conservation index | 0.53 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574184 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 671033 102 + 1281640 CACU---AGAGCUUGUAGAGGAAGGAGUUUGUGGUAAGUGCUGCAUAAUGCUUUGCACCUCGUUCUCGCUGGGAGAUUCAGCAAAUAUUGUGGUGUUGGCGAGGA (((.---.((((((.(......).)))))))))(((((.((........))))))).(((((((..(((((.((.(((.....))).)).)))))..))))))). ( -26.70) >DroVir_CAF1 8205 99 + 1 ------CCGAGUUAGUCGAGGAGGGCGCUUGUGGCAAAUGUUGCAGUAUAUUCUGGACUUCAUUCUCGCUGGGCGAUUCAGCGAAUAUUGUUGUGUUACCGAGCA ------..(((..((((.((((....(((.(..((....))..))))...)))).)))).....)))(((.((..((.((((((...)))))).))..)).))). ( -33.30) >DroPse_CAF1 10280 105 + 1 CAAUAGCAGAGUUGGUUGAGGAUGGGACUUGCGGCAAAUGUUGUAAGAUAUUCUGUACCUCAUUCUCACUCGGAGUUUCAGCAAAAAUUGUUGUGUUGCCGAGAA ........(((.....(((((((((((((((((((....))))))))...)))))).)))))..))).(((((.....(((((.....))))).....))))).. ( -34.40) >DroGri_CAF1 1206 105 + 1 AAAUACCCGAAUUGGUCGAGGACGGAGCUUGAGGCAAAUGCUGUAGAAUAUUCUGCACCUCAUUCUCGCUUGGCGAUUCGGCGAAUAUUGUCGUAUUGCCGAGAA .....(((((.....))).))...(((..(((((.......((((((....)))))))))))..))).(((((((((.((((((...)))))).))))))))).. ( -37.31) >DroYak_CAF1 1535 102 + 1 CACU---AGAGCUCGUAGAGGAAGGAGUUUGUGAUAAGUGCUGCAUUAUAUUUUGCACCUCGUUCUCGCUGGGAGAUUCAGCAAAUAUUGUGGUGUUGGCGAGGA (((.---.((((((.(......).)))))))))........((((........))))(((((((..(((((.((.(((.....))).)).)))))..))))))). ( -26.60) >DroPer_CAF1 16830 105 + 1 CAAUAGCAGAGUUGGUUGAGGAUGGGACUUGCGGCAAAUGUUGUAAGAUAUUCUGUACCUCAUUCUCACUCGGAGUUUCAGCAAAAAUUGUUGUGUUGCCGAGAA ........(((.....(((((((((((((((((((....))))))))...)))))).)))))..))).(((((.....(((((.....))))).....))))).. ( -34.40) >consensus CAAU__CAGAGUUGGUAGAGGAAGGAGCUUGUGGCAAAUGCUGCAAAAUAUUCUGCACCUCAUUCUCGCUGGGAGAUUCAGCAAAUAUUGUUGUGUUGCCGAGAA ........(((......((((..((((.(((((((....)))))))....))))...))))...))).((.((.(((.((((((...)))))).))).)).)).. (-17.00 = -16.67 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:22 2006