Locus 91

Sequence ID 4_DroMel_CAF1
Location 671,033 – 671,135
Length 102
Max. P 0.574184
window143

overview

Window 3

Location 671,033 – 671,135
Length 102
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 77.36
Mean single sequence MFE -32.12
Consensus MFE -17.00
Energy contribution -16.67
Covariance contribution -0.33
Combinations/Pair 1.42
Mean z-score -1.74
Structure conservation index 0.53
SVM decision value 0.08
SVM RNA-class probability 0.574184
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 671033 102 + 1281640
CACU---AGAGCUUGUAGAGGAAGGAGUUUGUGGUAAGUGCUGCAUAAUGCUUUGCACCUCGUUCUCGCUGGGAGAUUCAGCAAAUAUUGUGGUGUUGGCGAGGA
(((.---.((((((.(......).)))))))))(((((.((........))))))).(((((((..(((((.((.(((.....))).)).)))))..))))))). ( -26.70)
>DroVir_CAF1 8205 99 + 1
------CCGAGUUAGUCGAGGAGGGCGCUUGUGGCAAAUGUUGCAGUAUAUUCUGGACUUCAUUCUCGCUGGGCGAUUCAGCGAAUAUUGUUGUGUUACCGAGCA
------..(((..((((.((((....(((.(..((....))..))))...)))).)))).....)))(((.((..((.((((((...)))))).))..)).))). ( -33.30)
>DroPse_CAF1 10280 105 + 1
CAAUAGCAGAGUUGGUUGAGGAUGGGACUUGCGGCAAAUGUUGUAAGAUAUUCUGUACCUCAUUCUCACUCGGAGUUUCAGCAAAAAUUGUUGUGUUGCCGAGAA
........(((.....(((((((((((((((((((....))))))))...)))))).)))))..))).(((((.....(((((.....))))).....))))).. ( -34.40)
>DroGri_CAF1 1206 105 + 1
AAAUACCCGAAUUGGUCGAGGACGGAGCUUGAGGCAAAUGCUGUAGAAUAUUCUGCACCUCAUUCUCGCUUGGCGAUUCGGCGAAUAUUGUCGUAUUGCCGAGAA
.....(((((.....))).))...(((..(((((.......((((((....)))))))))))..))).(((((((((.((((((...)))))).))))))))).. ( -37.31)
>DroYak_CAF1 1535 102 + 1
CACU---AGAGCUCGUAGAGGAAGGAGUUUGUGAUAAGUGCUGCAUUAUAUUUUGCACCUCGUUCUCGCUGGGAGAUUCAGCAAAUAUUGUGGUGUUGGCGAGGA
(((.---.((((((.(......).)))))))))........((((........))))(((((((..(((((.((.(((.....))).)).)))))..))))))). ( -26.60)
>DroPer_CAF1 16830 105 + 1
CAAUAGCAGAGUUGGUUGAGGAUGGGACUUGCGGCAAAUGUUGUAAGAUAUUCUGUACCUCAUUCUCACUCGGAGUUUCAGCAAAAAUUGUUGUGUUGCCGAGAA
........(((.....(((((((((((((((((((....))))))))...)))))).)))))..))).(((((.....(((((.....))))).....))))).. ( -34.40)
>consensus
CAAU__CAGAGUUGGUAGAGGAAGGAGCUUGUGGCAAAUGCUGCAAAAUAUUCUGCACCUCAUUCUCGCUGGGAGAUUCAGCAAAUAUUGUUGUGUUGCCGAGAA
........(((......((((..((((.(((((((....)))))))....))))...))))...))).((.((.(((.((((((...)))))).))).)).)).. (-17.00 = -16.67 +  -0.33) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:22 2006