Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 669,970 – 670,088 |
Length | 118 |
Max. P | 0.982807 |
Location | 669,970 – 670,088 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 96.12 |
Mean single sequence MFE | -24.02 |
Consensus MFE | -20.96 |
Energy contribution | -21.12 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.95 |
Structure conservation index | 0.87 |
SVM decision value | 1.93 |
SVM RNA-class probability | 0.982807 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 669970 118 - 1281640 GCAUGCAAACUCAUUUGGUAAAUUACACAUUAAUAAA-UAUGUAUUACAACAACUAUACAUAUGUUUAUGGAAAAUAAAAAUUUUCAGUAACGACUGAAGUCGAGUGUCGGUAGCAUUA ((.(((..((((.((..((...((((.(((......(-(((((((..........))))))))....)))((((((....)))))).))))..))..))...))))....))))).... ( -24.70) >DroSec_CAF1 2478 118 - 1 GCAUGCAAACUCAUUUGGUAAAUUACACAUUAAUAAA-UAUGUAUUACAACAACUAUGCAUAUGUUUAUGGAAAAUAAAAAUUUUCAGUAACGACUGAAGUCGAGUGUCGGUAGCAUUA ((.(((..((((.((..((...((((.(((......(-(((((((..........))))))))....)))((((((....)))))).))))..))..))...))))....))))).... ( -24.70) >DroSim_CAF1 590 118 - 1 GCAUGCAAACUCAUUUGGUAAAUUACACAUUAAUAAA-UAUGUAUUACAACAACUAUGCAUAUGUUUAUGGAAAAUAAAAAUUUUCAGUAACGACUGAAGUCGAGUGUCGGUAGCAUUA ((.(((..((((.((..((...((((.(((......(-(((((((..........))))))))....)))((((((....)))))).))))..))..))...))))....))))).... ( -24.70) >DroEre_CAF1 12283 119 - 1 GCAUGCAAACUCAUAUGGUAAAUUACACAUUAAUAAAUUAUGUAUUGCAACACCUAUACAUAUGUUUAUGGAAAAUAAAAAUUUUCAGUAACGACUGAAGUCGAGUGUCGGUAGCAUUA ((.(((((....(((((((..((((.....))))..))))))).)))))..(((.((((......((((.((((((....)))))).))))((((....)))).)))).))).)).... ( -23.60) >DroYak_CAF1 476 116 - 1 ---UGCAAACUCAUAUGGUAACUUACACAUUAAUAAAUUAUGUAUUGCAACACCUAUACAUAUGUUUAUGGAAAAUAAAAAUUUUCAGUAACGACUGAAGUCGAGUGUCGGUAGCAUUA ---(((..(((.....))).(((.((((....(((((((((((((..........))))))).)))))).((((((....)))))).....((((....)))).)))).))).)))... ( -22.40) >consensus GCAUGCAAACUCAUUUGGUAAAUUACACAUUAAUAAA_UAUGUAUUACAACAACUAUACAUAUGUUUAUGGAAAAUAAAAAUUUUCAGUAACGACUGAAGUCGAGUGUCGGUAGCAUUA ((.(((..((((..........((((.(((.((((...(((((((..........))))))))))).)))((((((....)))))).)))).(((....)))))))....))))).... (-20.96 = -21.12 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:21 2006