Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 154,182 – 154,287 |
Length | 105 |
Max. P | 0.684576 |
Location | 154,182 – 154,287 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 93.02 |
Mean single sequence MFE | -29.60 |
Consensus MFE | -22.74 |
Energy contribution | -22.80 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.11 |
Mean z-score | -2.11 |
Structure conservation index | 0.77 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684576 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 154182 105 + 1281640 UUAUACAGAAAUGUGCUCAACGCGUGCUUUGGUGUAUGUGUAUUCACAUUACCACUUAACAAGUUAAAGGGUGUCCUGCCCAGAGGAACCAGAUUAAGCUUGAAG .........((((((....((((((((......))))))))...)))))).........((((((.((.(((.((((......)))))))...)).))))))... ( -28.00) >DroSec_CAF1 28760 105 + 1 UUAUACAGAAAUGUGCUCAACGCGUGCUUUGGUGUAUGUGUAUUCACAUUACAACUUAACAAGUUAAAUGGUGUCCUGCCCAAAGGAACCAGAUUAAGCUUGAAG .......(.((((((....((((((((......))))))))...)))))).).......((((((...((((.((((......)))))))).....))))))... ( -29.50) >DroEre_CAF1 15961 105 + 1 CUAUACAAAAAUGUGCUCAAUGCGUGCUUUGGUGUAUGUGUAUUCACAUUAACACUUAACAAGUUAAAUGGCGUCCUGCCCAGCGGGACCAGAUUAAGCUUGAAG .........((((((....((((((((......))))))))...)))))).........((((((.(((.(.(((((((...))))))))..))).))))))... ( -29.10) >DroYak_CAF1 16116 105 + 1 CUAUACAGAAAUGUGUUCAAUGCGUGCUUUGGUGUAUGUGUAUUUACAUUUCCACUUAACAAGUUAAAUGGCGUCCUGCCCAGCGGGACCAGAUUAAGCUUGAAG .......((((((((....((((((((......))))))))...)))))))).......((((((.(((.(.(((((((...))))))))..))).))))))... ( -31.80) >consensus CUAUACAGAAAUGUGCUCAACGCGUGCUUUGGUGUAUGUGUAUUCACAUUACCACUUAACAAGUUAAAUGGCGUCCUGCCCAGAGGAACCAGAUUAAGCUUGAAG .........((((((....((((((((......))))))))...)))))).........((((((...((((.(((........))))))).....))))))... (-22.74 = -22.80 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:01 2006