Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 649,910 – 650,019 |
Length | 109 |
Max. P | 0.500000 |
Location | 649,910 – 650,019 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.69 |
Mean single sequence MFE | -30.10 |
Consensus MFE | -20.78 |
Energy contribution | -22.18 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.81 |
Structure conservation index | 0.69 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 649910 109 - 1281640 -----GUCUUUUGCUCUCGUUUUUGACUUAGUU------CAGAGUCACAAAAACAGCACCCUCGCCGGGCAAUUGCUGGUAUUAAACUGAGUAGCUAAGCUACCUAAUACAAUGCUCUGU -----(((....((....))....)))......------((((((........((((((((.....)))....)))))((((((....(.(((((...))))))))))))...)))))). ( -26.60) >DroSec_CAF1 6145 115 - 1 -----GGCUUUUGCUCUCGUUUUUGACUUUGUUCAGGUUCAGAGUCACAGAAACAGCACCCUCGCAGGGCAAUUGCUGGUAUUAAACUGAGUAGCUAAGCUACCUAAUACUAUGCUCUGU -----(((..(((((((.(((((((((((((........))))))))..))))).((......)))))))))..)))(((((((....(.(((((...)))))))))))))......... ( -34.60) >DroSim_CAF1 5707 109 - 1 -----GGCUUUUGCUCUCGUUUUUGACUUUGUU------CAGAGUCACAAAAACAGCACCCUCGCAGGGCAAUUGCUGGUAUUAAACUGAGUAGCUAAGCUACCUAAUACUAUGCUCUGU -----(((..(((((((.((((((((((((...------.)))))))..))))).((......)))))))))..)))(((((((....(.(((((...)))))))))))))......... ( -31.80) >DroEre_CAF1 5394 114 - 1 GGCUAGACUUUUGCUCUCGAUUUUGACUAAGUU------CAGAGUCACAAAAACAGCACCCUCGCAGGGCAAUUGCUGGUAUUAAACUGAGUAGCUAAGCUACCGAAUACGAUGCUCUGU ((.(((.(((..((((((((((((((......)------))))))).......((((((((.....)))....)))))..........))).))).))))))))................ ( -30.80) >DroYak_CAF1 4920 111 - 1 GGCUAGGCUUUUGCUCUCGAUUUCGACUAAAUU------CAGAGUCACAAAAACAGCACCCUCACAGGGCAAUUGCUGGUAUUAAACUGA---GCUAAGCUACCAAAUACGAUGCUCUAU ((...(((((..((((..((((..((......)------)..)))).......((((((((.....)))....)))))..........))---)).))))).))................ ( -26.70) >consensus _____GGCUUUUGCUCUCGUUUUUGACUUAGUU______CAGAGUCACAAAAACAGCACCCUCGCAGGGCAAUUGCUGGUAUUAAACUGAGUAGCUAAGCUACCUAAUACGAUGCUCUGU .....(((((..((((((......(((((.(........).))))).......((((((((.....)))....)))))..........))).))).)))))................... (-20.78 = -22.18 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:16 2006