Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 634,335 – 634,455 |
Length | 120 |
Max. P | 0.745235 |
Location | 634,335 – 634,455 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.00 |
Mean single sequence MFE | -30.22 |
Consensus MFE | -26.08 |
Energy contribution | -25.16 |
Covariance contribution | -0.92 |
Combinations/Pair | 1.26 |
Mean z-score | -1.42 |
Structure conservation index | 0.86 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.745235 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 634335 120 + 1281640 GUAGAUAUUAACACAGAGGUGAAGAGUAUAGCCGUCAACAAAAAAGGCGUAUAUUUUGCUUUCAGAGAUCAGGGCGCUUGUAUUAGCGUUCUGGCAGUAAAAGUAUAUUAUAUUACGUGU ..........((((.((((..(((.((((.(((............))))))).)))..))))....(.((((((((((......))))))))))).......(((........))))))) ( -29.80) >DroGri_CAF1 5066 120 + 1 GUGGAUAUAAAUACCGAAGUGAAGAGCAUAGCUGUUAACAAGAAGGGUGUCUAUUUCGCUUUCCGGGAUCAGGGCGCUUGCAUAAGUGUUCUUGCGGUAAAAGUCUACUACAUCACAUGU ((((((.....(((((.....((((((((...(((.........((((((((((..((.....))..))..)))))))))))...)))))))).)))))...))))))............ ( -29.50) >DroSec_CAF1 10327 120 + 1 GUAGAUAUUAACACAGAGGUGAAAAGUAUAGCCGUGAACAAAAAAGGCGUAUAUUUUGCUUUCAGAGAUCAGGGCGCUUGUAUUAGCGUUCUGGCAGUAAAAGUAUAUUAUAUUACGUGU ..........((((.((((..(((.((((.(((............))))))).)))..))))....(.((((((((((......))))))))))).......(((........))))))) ( -30.10) >DroSim_CAF1 16406 120 + 1 GUAGAUAUUAACACAGAGGUGAAAAGUAUAGCCGUGAACAAAAAAGGCGUAUAUUUUGCUUUCAGAGAUCAGGGCGCUUGUAUUAGCGUUCUGGCAGUAAAAGUAUAUUAUAUUACGUGU ..........((((.((((..(((.((((.(((............))))))).)))..))))....(.((((((((((......))))))))))).......(((........))))))) ( -30.10) >DroYak_CAF1 3822 120 + 1 GUAGAUAUUAACACUGAGGUGAAGAGCAUAGCCGUGAACAAAAAAGGCGUAUAUUUUGCUUUCAGAGAUCAGGGCGCUUGUAUUAGCGUCCUGGCGGUAAAAGUAUAUUAUAUUACGUGU ...........(((....)))....((((.(((((........((((((.......)))))).......(((((((((......))))))))))))))....(((........))))))) ( -31.60) >consensus GUAGAUAUUAACACAGAGGUGAAGAGUAUAGCCGUGAACAAAAAAGGCGUAUAUUUUGCUUUCAGAGAUCAGGGCGCUUGUAUUAGCGUUCUGGCAGUAAAAGUAUAUUAUAUUACGUGU ((((...........(((((((((.((((.(((............))))))).)))))))))....(.((((((((((......))))))))))).................)))).... (-26.08 = -25.16 + -0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:15 2006