Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 625,766 – 625,883 |
Length | 117 |
Max. P | 0.878510 |
Location | 625,766 – 625,883 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 90.03 |
Mean single sequence MFE | -41.80 |
Consensus MFE | -37.84 |
Energy contribution | -38.40 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -2.12 |
Structure conservation index | 0.91 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.878510 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 625766 117 - 1281640 ACUCUGGCCACAUCUCGGGAGGAGACAGUGGAGACACGGAUGUCAAUGGAGAUGGUGCAGGUGGAGGAGUCGUUGAGGUUGGUGAAGUCACCAACCAAUCCAGCGAGGCUACAGGGA .(((((((..((((((.(...((.(..(((....)))...).))..).))))))..)).......((..((((((.((((((((....))))))))....))))))..)).))))). ( -48.50) >DroEre_CAF1 6614 114 - 1 ACUCUGGCCACAUCUCGGGAGGAGACAGUGGCGACACGGAUGUCAAUGGAGAUGAUGGAGGUAGAGGAGUCGUUGAUGUUGGUGACCUC---AACCAAUCCAGCGAGGCUGCAGGGA .(((((.(((((((((.(...((.(..(((....)))...).))..).)))))).))).......((..((((((..((((((......---.)))))).))))))..)).))))). ( -40.20) >DroYak_CAF1 7239 117 - 1 ACUCUGGCCACAUCUCGGGAGGAGACAGUGGCGACACGGAUGUCAAUGGAGAUGAUGGAGGUAGAGGAGUCACUGAGGUUGGAGAGGUCAUUACCCAAUCCAGCGAGGCUGUAGGGA .(((((.(((((((((.(...((.(..(((....)))...).))..).)))))).)))...)))))(..((.(((.((((((..((....))..))))))))).))..)........ ( -36.70) >consensus ACUCUGGCCACAUCUCGGGAGGAGACAGUGGCGACACGGAUGUCAAUGGAGAUGAUGGAGGUAGAGGAGUCGUUGAGGUUGGUGAAGUCA__AACCAAUCCAGCGAGGCUGCAGGGA .((((((((.((((((.(...((.(..(((....)))...).))..).))))))...............((((((.(((((((..........))))))))))))))))..))))). (-37.84 = -38.40 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:11 2006