Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 623,580 – 623,678 |
Length | 98 |
Max. P | 0.651284 |
Location | 623,580 – 623,678 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 86.05 |
Mean single sequence MFE | -38.87 |
Consensus MFE | -29.61 |
Energy contribution | -29.73 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.17 |
Mean z-score | -2.02 |
Structure conservation index | 0.76 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651284 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 623580 98 + 1281640 GCCGCCAUGUGGGUCCAAGUCCGUCGGUAUUGUGCCGGUGGAGCCACUUGGACCUGUUGCUGACCCAAGAGACAUUCCAGAGCUCAAAGGAGCUCGCU ((.((...(..(((((((((((..((((.....))))..)))....))))))))..).))...................((((((....)))))))). ( -39.90) >DroEre_CAF1 4272 98 + 1 GCCGCUAUGUGAGUCAACUUCCGUCGGCAUGGUUCCGGUGGAGCCACUUGAACCUGUUGCUGACCCAAGUGUUACUACAGAGCUCAAAGGAGCUCGCU ...((..(((.(((..((((..(((((((.(((((.((((....)))).)))))...)))))))..))))...))))))((((((....)))))))). ( -42.00) >DroYak_CAF1 5508 98 + 1 GCCGCCAUGGGACUCAACUUCCGUUGGCAUGGUUCCGGUGGAGCUGCUUGAACCUGUUGCAGACCCAAGUGUCACUGCAGAGCUCAAAGGAGCUCGCU ((.(((((((((......))))).))))..(((((.(((......))).)))))...(((((((......)))..))))((((((....)))))))). ( -34.70) >consensus GCCGCCAUGUGAGUCAACUUCCGUCGGCAUGGUUCCGGUGGAGCCACUUGAACCUGUUGCUGACCCAAGUGUCACUACAGAGCUCAAAGGAGCUCGCU ...((.................(((((((.(((((.((((....)))).)))))...)))))))...............((((((....)))))))). (-29.61 = -29.73 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:10 2006