Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 608,201 – 608,303 |
Length | 102 |
Max. P | 0.921187 |
Location | 608,201 – 608,303 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 77.46 |
Mean single sequence MFE | -33.67 |
Consensus MFE | -22.84 |
Energy contribution | -22.65 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.40 |
Mean z-score | -1.78 |
Structure conservation index | 0.68 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921187 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 608201 102 + 1281640 UAGGCUUAAAUUGCGGAGCGUGUGGGGAGUUGCUUGGACUUCGUCCAGAAAACUUGGAAGCUCUACCCUGUGCACACAUUCUUCAUGCAAGGUAAGCU----UUUA .(((((((..((((((((.(((((..(((((..((((((...))))))..)))))....((.(......).)).))))).))))..))))..))))))----)... ( -34.90) >DroPse_CAF1 2838 97 + 1 UAGGCCUAAAUUGUGGUGCUUGUGGGGAAUUAUUCGGCUUACAGCCGGGCAAUCUAGAAGCCCUACCCUGUGCACACAUUCUCCAUGCGAGGUAGGU--------- ...(((((...((((.(((..(..(((........(((.....)))((((.........))))..)))..)))))))).((((.....)))))))))--------- ( -32.00) >DroGri_CAF1 3042 106 + 1 UGGGCCUCAAUUGUGGGGCAUGUGGCGAGGUCUUUGGGCUACAACCAGCCAACCUUGAGGCACUACCAUGUGCCCACAUACUCCAUGCCAGGUAAUUCGACCCUCA ..(((.......((((((.(((((.((((((.....((((......)))).)))))).(((((......)))))))))).))))))))).(((......))).... ( -39.11) >DroEre_CAF1 3398 100 + 1 UAGGCUUAAAUUGCGGAGCGUGUGGGGAGUUGUUUGGCCUUCGUCCAGAAAACUUGGAAGCUCUACCCUGUGCACACAUUCUUCAUGCAAGGUAAGCC----UU-- .(((((((..((((((((.(((((..(((((.((((((....).))))).)))))....((.(......).)).))))).))))..))))..))))))----).-- ( -34.80) >DroYak_CAF1 4133 100 + 1 UAGGCUUAAAUUGCGGAGCGUGUGGGGAGUUGUUUGGUCUUCGUCCGGAAAACUUGGAAGCUCUACCCUGUUCACACAUUCUUCAUGCAAGGUAAGUU----UA-- ((((((((..((((((((.(((((.((((((....(((.(((.....))).)))....))))))..........))))).))))..))))..))))))----))-- ( -29.20) >DroPer_CAF1 2838 97 + 1 UAGGCCUAAAUUGUGGUGCUUGUGGGGAAUUAUUCGGCUUACAGCCGGGCAAUCUAGAAGCCCUACCCUGUGCACACAUUCUCCAUGCGAGGUAGGU--------- ...(((((...((((.(((..(..(((........(((.....)))((((.........))))..)))..)))))))).((((.....)))))))))--------- ( -32.00) >consensus UAGGCCUAAAUUGCGGAGCGUGUGGGGAGUUGUUUGGCCUACAUCCAGAAAACCUGGAAGCUCUACCCUGUGCACACAUUCUCCAUGCAAGGUAAGU_____UU__ ..((((((..((((((((.(((((....(((.(((((.......))))).)))......((.(......).)).))))).))))..))))..))))))........ (-22.84 = -22.65 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:08 2006