Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 599,336 – 599,452 |
Length | 116 |
Max. P | 0.997422 |
Location | 599,336 – 599,452 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.99 |
Mean single sequence MFE | -28.82 |
Consensus MFE | -27.42 |
Energy contribution | -27.79 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.09 |
Mean z-score | -2.82 |
Structure conservation index | 0.95 |
SVM decision value | 2.86 |
SVM RNA-class probability | 0.997422 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 599336 116 + 1281640 CUUAGACCUGAAUCCAAAAUUUUCUGUCAAUGUAUUAA---AAGCCUUUAAAGCGACAAAAAA-AUUUUUUUAGAAUUACAGGCUGUUAUUACUUUGGCAGGAUUAUAUUAAUGCGGACC .......(((...........(((((((((.(((.(((---.(((((.(((..(...(((((.-...))))).)..))).))))).))).))).)))))))))...........)))... ( -25.05) >DroSec_CAF1 5347 116 + 1 CUUAGACCUGUAUCCAAAAUUUUCUGUCAAUGUAUUAA---AAGCCUUUAAAGCGACGAAAUU-UGUUUUUUAGAAUUACAGGCUGUUAUUACUUUGGCAGGAUUAUAUUAAUGCGGACC .......((((((........(((((((((.(((.(((---.(((((.(((..(...((((..-...))))..)..))).))))).))).))).)))))))))........))))))... ( -28.89) >DroEre_CAF1 6800 120 + 1 CUUAGACCUGUAUCCAAAACUUUCUGCCAAUGUAUUAAAUUAAGCCUUUAAAACGACGAAAAUGUAUUUUUUAGAAUUACAGGUUGUUAUUACAUUGGCAGGAUAAUAUUAAUGCGGACC .......((((((........(((((((((((((.(((....(((((.(((..(...(((((.....))))).)..))).))))).))).)))))))))))))........))))))... ( -31.79) >DroYak_CAF1 8434 117 + 1 CUUAGACCUGUAUUCAAAACUUUCUGUCAAUGUACUAA---AAGCCUUUAAAGCGACGAAAAUGUAUUUUUUAGAAUUACAGGUUGUUAUUACAUUGGCAGGAUAAUAUUACUGCGGACC .......(((((.........(((((((((((((.(((---.(((((.(((..(...(((((.....))))).)..))).))))).))).))))))))))))).........)))))... ( -29.57) >consensus CUUAGACCUGUAUCCAAAACUUUCUGUCAAUGUAUUAA___AAGCCUUUAAAGCGACGAAAAU_UAUUUUUUAGAAUUACAGGCUGUUAUUACAUUGGCAGGAUAAUAUUAAUGCGGACC .......((((((........(((((((((((((.(((....(((((.(((..(...((((......))))..)..))).))))).))).)))))))))))))........))))))... (-27.42 = -27.79 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:07 2006