Locus 80

Sequence ID 4_DroMel_CAF1
Location 577,652 – 577,746
Length 94
Max. P 0.758808
window128

overview

Window 8

Location 577,652 – 577,746
Length 94
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 74.95
Mean single sequence MFE -23.33
Consensus MFE -6.45
Energy contribution -6.68
Covariance contribution 0.23
Combinations/Pair 1.48
Mean z-score -2.56
Structure conservation index 0.28
SVM decision value 0.50
SVM RNA-class probability 0.758808
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 577652 94 - 1281640
CUGUGUUCGCGAUUUCCCCCGUACUUAUCCUGUGCCUAAACCG---UCG-----AGCGAAACGUGAGUAUAUGACCACCUAUAUA--------CU---CACACAUUUUCUACA
.((((((((((.(((.....((((.......))))..))).))---.))-----))).....(((((((((((......))))))--------))---))))))......... ( -24.00)
>DroSec_CAF1 7971 94 - 1
CUGUGUUCGCGAUUUUCCCCGUACUUAUCCUGUGCCUAAACCG---UCG-----AGCGAAACGUGAGUAUAUGACCACCUAUAUA--------CU---CGCACAUUUUCUACA
.((((((((((.(((.....((((.......))))..))).))---.))-----))).....(((((((((((......))))))--------))---))))))......... ( -24.30)
>DroSim_CAF1 7838 94 - 1
CUGUGUUCGCGAUUUUCCCCGUACUUAUCCUGUGCCUAAACCG---UCG-----AGCGAAACGUGAGUAUAUGACCACCUAUAUA--------CU---CGCACAUUUUCUACA
.((((((((((.(((.....((((.......))))..))).))---.))-----))).....(((((((((((......))))))--------))---))))))......... ( -24.30)
>DroEre_CAF1 9563 94 - 1
CUGUGUGCUCGAAUUCCCCCGUACUUAUCCUGUGCCUAAACCG---UCG-----AGCGAAACGUGAGUACAUGACCACUCAUAUA--------CU---CGCACAUUUUCUACA
..((((((((((........((((.......))))........---)))-----))).....(((((((.((((....)))).))--------))---)))))))........ ( -27.39)
>DroWil_CAF1 8393 108 - 1
CUU-----UCAAUUGCACAUGCUAUCAUUCAAAACCAAACCCGUAUUCGAGAAAUGUGAAACGUGAGUAUGUGUGUACAUAUUUAUGUACAUACUACUGUCGUGCAUGUUAUG
...-----........((((((.......................(((((....).))))(((..((((.((((((((((....))))))))))))))..))))))))).... ( -25.70)
>DroYak_CAF1 8618 94 - 1
CUGUGUGCGCGAAUUCCCCCAUAUCUAUCCUGUGCCUAAACCG---UCG-----AGCGAAACGUAAGUAUAUCACCACUCAUAUA--------CU---CGCACAUUUUCUACA
..(((((((((........((((.......)))).......((---...-----..))...))).(((((((........)))))--------))---.))))))........ ( -14.30)
>consensus
CUGUGUUCGCGAUUUCCCCCGUACUUAUCCUGUGCCUAAACCG___UCG_____AGCGAAACGUGAGUAUAUGACCACCUAUAUA________CU___CGCACAUUUUCUACA
.(((((..............((((((((....(((......((....))......)))....))))))))(((......))).................)))))......... ( -6.45 =  -6.68 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:01 2006