Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 577,119 – 577,209 |
Length | 90 |
Max. P | 0.987804 |
Location | 577,119 – 577,209 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 74.86 |
Mean single sequence MFE | -22.09 |
Consensus MFE | -15.94 |
Energy contribution | -16.12 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.18 |
Mean z-score | -1.66 |
Structure conservation index | 0.72 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.881835 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 577119 90 + 1281640 AGGAUUCUACAGGUACGCACAUGAUUAAAGCUUGGAAGGGAUUAGUCAUUUUUGAGCCCGAUAAGGCGGAGUUCCGACUACAAGGGCAUU ..((((((.(((((...............)))))...))))))..(((....)))((((....((.(((....))).))....))))... ( -20.86) >DroSec_CAF1 7466 73 + 1 AGGAUUUU-----------------CGAAGCUUCGAAGGGAUUAGCCAUUUUUGAGCCCAAUAAGUCGGAGUUCCGACUACAAGGGCAUU .((.((((-----------------(((....)))))))......))........((((....((((((....))))))....))))... ( -23.70) >DroSim_CAF1 7333 73 + 1 AGGAUUUU-----------------CGAAGCUUCGAAGGGAUUAGCCAUUUUUGAGCCCAAUAAGUCGGAGUUCCGACUACAAGGGCAUU .((.((((-----------------(((....)))))))......))........((((....((((((....))))))....))))... ( -23.70) >DroYak_CAF1 8056 84 + 1 AUGAUUUUACAGGUACGCAAAUUA------AUUUAAAGGGAUCAGUCAAUUUUGAACCCGACAAGUCGGAGUUCCGACUACAAGGGCAGU ................((......------.......(((.((((......)))).)))....((((((....))))))......))... ( -20.10) >consensus AGGAUUUU_________________CGAAGCUUCGAAGGGAUUAGCCAUUUUUGAGCCCAAUAAGUCGGAGUUCCGACUACAAGGGCAUU ................................(((((.((.....))...)))))((((....((((((....))))))....))))... (-15.94 = -16.12 + 0.19)
Location | 577,119 – 577,209 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 74.86 |
Mean single sequence MFE | -18.75 |
Consensus MFE | -16.36 |
Energy contribution | -16.43 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.10 |
Mean z-score | -1.78 |
Structure conservation index | 0.87 |
SVM decision value | 2.09 |
SVM RNA-class probability | 0.987804 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 577119 90 - 1281640 AAUGCCCUUGUAGUCGGAACUCCGCCUUAUCGGGCUCAAAAAUGACUAAUCCCUUCCAAGCUUUAAUCAUGUGCGUACCUGUAGAAUCCU ...((((....((.(((....))).))....)))).((...((((.(((...((....))..))).)))).))................. ( -14.10) >DroSec_CAF1 7466 73 - 1 AAUGCCCUUGUAGUCGGAACUCCGACUUAUUGGGCUCAAAAAUGGCUAAUCCCUUCGAAGCUUCG-----------------AAAAUCCU ...((((....((((((....))))))....))))..................(((((....)))-----------------))...... ( -21.70) >DroSim_CAF1 7333 73 - 1 AAUGCCCUUGUAGUCGGAACUCCGACUUAUUGGGCUCAAAAAUGGCUAAUCCCUUCGAAGCUUCG-----------------AAAAUCCU ...((((....((((((....))))))....))))..................(((((....)))-----------------))...... ( -21.70) >DroYak_CAF1 8056 84 - 1 ACUGCCCUUGUAGUCGGAACUCCGACUUGUCGGGUUCAAAAUUGACUGAUCCCUUUAAAU------UAAUUUGCGUACCUGUAAAAUCAU ...((((....((((((....))))))....)))).........................------...((((((....))))))..... ( -17.50) >consensus AAUGCCCUUGUAGUCGGAACUCCGACUUAUCGGGCUCAAAAAUGACUAAUCCCUUCGAAGCUUCG_________________AAAAUCCU ...((((....((((((....))))))....))))....................................................... (-16.36 = -16.43 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:58 2006