Locus 78

Sequence ID 4_DroMel_CAF1
Location 576,702 – 576,798
Length 96
Max. P 0.823357
window125

overview

Window 5

Location 576,702 – 576,798
Length 96
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 83.12
Mean single sequence MFE -21.78
Consensus MFE -14.04
Energy contribution -16.49
Covariance contribution 2.45
Combinations/Pair 1.04
Mean z-score -2.44
Structure conservation index 0.64
SVM decision value 0.69
SVM RNA-class probability 0.823357
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 576702 96 + 1281640
CCAUUAUGAAAAACUACGCUACUUCAGCGGGAAAGCGGCUAUACAUAUGUAAAUAUACGAGUAUAUCCAGAUUUUACCCUGU--------CUAAAUCCCUCAAG
......(((........(((.....)))((((....((.(((((...((((....)))).))))).))((((........))--------))...))))))).. ( -17.50)
>DroSec_CAF1 6870 100 + 1
UCAUUUUGAAAAAUUACGCUAGUUCAGAGGGAAAACGGCUAUACAUA----CAUAUACGAGUAUAGCCAGAUUUUACCCUUUCUUAGCCUCUAAAUCCAGAAAG
...(((((.........(((((...(((((((((((((((((((...----.........)))))))).).)))).)))))).))))).........))))).. ( -24.07)
>DroSim_CAF1 6738 100 + 1
UCAUUUUGAAAAAUUACGCUAGUUCAGAGGGAAAACGGCUAUACAUA----CAUAUACGAGUAUAGCCAGAUUUUACCCUUUCUUAGCCUCUAAAUCCAGAACC
...(((((.........(((((...(((((((((((((((((((...----.........)))))))).).)))).)))))).))))).........))))).. ( -23.77)
>consensus
UCAUUUUGAAAAAUUACGCUAGUUCAGAGGGAAAACGGCUAUACAUA____CAUAUACGAGUAUAGCCAGAUUUUACCCUUUCUUAGCCUCUAAAUCCAGAAAG
.................(((((...(((((((((((((((((((................)))))))).).)))).)))))).)))))................ (-14.04 = -16.49 +   2.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:53 2006