Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 571,993 – 572,113 |
Length | 120 |
Max. P | 0.545236 |
Location | 571,993 – 572,113 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.36 |
Mean single sequence MFE | -25.80 |
Consensus MFE | -18.15 |
Energy contribution | -20.27 |
Covariance contribution | 2.12 |
Combinations/Pair | 1.08 |
Mean z-score | -2.40 |
Structure conservation index | 0.70 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545236 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 571993 120 - 1281640 AUAAAUAGUAUUUGGCAUUUCUUGCAGCAAUGAUAUAAAAUGUUUAAAAUGAGAAUAAGUUGUUUACAUUUUUAUAAGAGAAGUUUUAUGCUCAAAAAGCUAGAAAUAUUUUGACCACAC .......((((..(((.(((((((.((.((((..((((..(((((.......)))))..))))...)))).)).))))))).)))..))))((((((...((....))))))))...... ( -17.00) >DroSec_CAF1 2503 117 - 1 AUAAAUAGUAUUUUGCAUUUCUUGCAGCGAUGAUAUAAAGUGGUUAAAAUGAAGCUAAGU---UCACAUUUUUAUAAAUGGAGUUUUAUGCUCAAAAAGCUAGUAACAUUUUGACCACAC ....(((.(((((((((.....))))).)))).)))...((((((((((((..((((.((---(..(((((....)))))((((.....))))....)))))))..)))))))))))).. ( -31.30) >DroSim_CAF1 2474 117 - 1 AUAAAUAGUAUUUUGCAUUCCUUGCAGAGAUGAUAUAAAGUGGUUAAAAUAAAGCUAAGU---UCACAUUUUUAUAAAUGGAGUUUUAUGCUCAAAAAGCUAGUAACAUUUUGACCACAC ..........(((((((.....)))))))..........(((((((((((...((((.((---(..(((((....)))))((((.....))))....)))))))...))))))))))).. ( -29.10) >consensus AUAAAUAGUAUUUUGCAUUUCUUGCAGCGAUGAUAUAAAGUGGUUAAAAUGAAGCUAAGU___UCACAUUUUUAUAAAUGGAGUUUUAUGCUCAAAAAGCUAGUAACAUUUUGACCACAC ....(((.(((((((((.....))))).)))).)))...((((((((((((..((((.((......(((((....)))))((((.....)))).....))))))..)))))))))))).. (-18.15 = -20.27 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:45 2006