Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 566,637 – 566,742 |
Length | 105 |
Max. P | 0.956409 |
Location | 566,637 – 566,742 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 59.88 |
Mean single sequence MFE | -26.97 |
Consensus MFE | -17.44 |
Energy contribution | -17.00 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.21 |
Mean z-score | -1.14 |
Structure conservation index | 0.65 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956409 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 566637 105 - 1281640 UACCAUUAGCGACAGUAGCGGCAGCUGCGGCUGCUGUGGAAAGUCGUAUCUUGAGCUUGCAGCACCAGCAU---------CAACAUCCCCUCCAACCACAUCA---ACAAAACCAAC (((.(((..(.((((((((.((....)).)))))))).)..))).)))..(((((((.(.....).))).)---------)))....................---........... ( -24.90) >DroGri_CAF1 24033 87 - 1 UAUCAUCAGCAACGGCAGCUGCUGCGGCGGCGGCGGUCGAAAGUCGACUGAUGGGUUUACACCAGCAACAA---------CAGAGUAGU---------------------CAGCAGC ........((....)).((((((((.(..(..(((((((.....)))))..(((.......)))))..)..---------)...)))).---------------------))))... ( -26.00) >DroYak_CAF1 17456 117 - 1 UACCACCAGCGACAGUAGCGGCAGCAGCGGCUGCUGUUGAAAGUCGUCUCUUAAGUUUGCAGCACCAAAUUCCACAUCAGCAACAUCAGCUGGAACCACAUCAACCACAACACCAAC .....((((((((..((((((((((....))))))))))...)))........((((((......)))))).................)))))........................ ( -30.00) >consensus UACCAUCAGCGACAGUAGCGGCAGCAGCGGCUGCUGUCGAAAGUCGUCUCUUGAGUUUGCAGCACCAACAU_________CAACAUCACCU__AACCACAUCA___ACAACACCAAC ........(((((..(.((((((((....)))))))).)...)))))...................................................................... (-17.44 = -17.00 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:43 2006