Locus 74

Sequence ID 4_DroMel_CAF1
Location 566,028 – 566,142
Length 114
Max. P 0.517082
window120

overview

Window 0

Location 566,028 – 566,142
Length 114
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.53
Mean single sequence MFE -43.42
Consensus MFE -21.44
Energy contribution -23.63
Covariance contribution 2.20
Combinations/Pair 1.12
Mean z-score -2.74
Structure conservation index 0.49
SVM decision value -0.03
SVM RNA-class probability 0.517082
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 566028 114 + 1281640
UUGCUUGGGGUGGCGUAUGACCAUAUGGGUGGUGUCCAAAUGGAUAAUUUGGACUCGGAACAUGUAAAGUUGCAGAGCUUGUAGGCACAGCAGUCUGAAC----GCUACCGCC--CAGAC
...((.((((((((((..(((.(((((..(.(.((((((((.....)))))))).).)..))))).....(((.(.(((....))).).))))))...))----)))))).))--.)).. ( -42.60)
>DroSec_CAF1 13267 114 + 1
UUGCUUGGGGUGGCGUAUGACCAUAUGGGUGGUGUCCAAAUGGAUAAUUUGGACUCGGAACAUGUAAAGUUGCAGAGCUUGUUGGCCCAGUAGUCUGAAC----GCUACCGCC--AAGAC
...(((((((((((((..(((....(((((.(.((((((((.....)))))))).)....((....(((((....)))))..)))))))...)))...))----)))))).))--))).. ( -46.20)
>DroSim_CAF1 16204 114 + 1
UUGCUUGGGGUGGCGUAUGACCAUAUGGGUGGUGUCCAAAUGGAUAAUUUGGACUCGGAACAUGUAAAGUUGCAGAGCUUGUUGGCCCAGUAGUCUGAAC----GCUACCGCC--AAGAC
...(((((((((((((..(((....(((((.(.((((((((.....)))))))).)....((....(((((....)))))..)))))))...)))...))----)))))).))--))).. ( -46.20)
>DroEre_CAF1 19009 114 + 1
UUGCUUGGUGUGGCGUAUGACCAUAUGGGUGGUGUCCAAAGGGAUAAUUUGGACUCGGAACAUGUAAAGUUGCAGUGCUAGUUGGCCCAGUAGUCUGAAC----GCUACUGCC--CAGAC
...((.((((((((((..(((....(((((.(.(((((((.......))))))).)((.((.((((....)))))).)).....)))))...)))...))----))))).)))--.)).. ( -37.50)
>DroWil_CAF1 12635 117 + 1
UAGCCUGCGGCGGGGUGUGCCCAUAAGGAUG---AGCAUACGGAUAGUUGGGACUGGGCACAUGUAAUGUUGCCGGGCCACCUUGGACGGCUCCUUGCACUCCCACUCCCACCCCAACUC
..(((...)))(((((((((.(((....)))---.)))))).......(((((.((((....(((((.(..((((..((.....)).))))..))))))..)))).))))).)))..... ( -45.70)
>DroYak_CAF1 16838 114 + 1
UUGCUUGGUGUGGCGUAUGACCAUAUGGGUGGUGUCCAAAUGGAUAAUUUGGACUCGGAACAUGUAAAGUUGAAGUACUUGUUGGUCCAGUAGUCUGAAC----GCUACCGCU--AAGAC
...(((((((((((((..(((((((((..(.(.((((((((.....)))))))).).)..))))).((((......))))...))))(((....))).))----)))).))))--))).. ( -42.30)
>consensus
UUGCUUGGGGUGGCGUAUGACCAUAUGGGUGGUGUCCAAAUGGAUAAUUUGGACUCGGAACAUGUAAAGUUGCAGAGCUUGUUGGCCCAGUAGUCUGAAC____GCUACCGCC__AAGAC
......(.((((((........(((((..(.(.((((((((.....)))))))).).)..)))))..((((((.(.(((....))).).)))).))........)))))).)........ (-21.44 = -23.63 +   2.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:42 2006