Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 560,912 – 561,029 |
Length | 117 |
Max. P | 0.976079 |
Location | 560,912 – 561,029 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 92.88 |
Mean single sequence MFE | -21.09 |
Consensus MFE | -20.49 |
Energy contribution | -19.86 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.12 |
Mean z-score | -2.02 |
Structure conservation index | 0.97 |
SVM decision value | 1.76 |
SVM RNA-class probability | 0.976079 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 560912 117 + 1281640 GUGUGUUCGGAAAUACUCAACACAUUUUGCACAAUCGUAUGCUCUUAGUUUCUCACUUGAAAUAAUAUUUACCAUAUGACAACAAAUGUUUCUUAUAUUUAGUAUAAGUAAACAAAA (((((((.((.....)).))))))).........(((((((......(((((......))))).........))))))).......((((((((((((...))))))).)))))... ( -20.66) >DroSec_CAF1 8591 117 + 1 GUGUGUUCGGAAAUACUAAACACAUUUUGCACAAUCGUAUGCUCUUAGUUUCUCAAUUGAAAUAAUAUUUACCAUAUGACAACAAAUGUUUCUUAUAUUUAGUAUAAGUAAACAAAA (((((((..(.....)..))))))).........(((((((......(((((......))))).........))))))).......((((((((((((...))))))).)))))... ( -21.36) >DroSim_CAF1 11442 117 + 1 GUGUGUUCCGAAAUACUAAACACAUUUUGCACAAUCGUAUGCUCUUAGUUUCUCAAUUGAAAUAAUAUUUACCAUAUGACAACAAAUGUUUCUUAUAUUUAGUAUAAGUAAACAAAA (((((((..(.....)..))))))).........(((((((......(((((......))))).........))))))).......((((((((((((...))))))).)))))... ( -18.66) >DroEre_CAF1 13782 117 + 1 GUGUGUUGAGUAAUACUAAACACAUUUUGCCCAGUUGUAUGUUCUUAGUUUCUUCAUUGAAAUAAUAUUCACUAUACAACAACAAAUGUUUCUUAUAUUCAGUAUAAGUAAACAAAA (((((((.((.....)).)))))))........(((((((((.....(((((......))))).......)).)))))))......((((((((((((...))))))).)))))... ( -23.70) >consensus GUGUGUUCGGAAAUACUAAACACAUUUUGCACAAUCGUAUGCUCUUAGUUUCUCAAUUGAAAUAAUAUUUACCAUAUGACAACAAAUGUUUCUUAUAUUUAGUAUAAGUAAACAAAA (((((((.((.....)).))))))).........(((((((......(((((......))))).........))))))).......((((((((((((...))))))).)))))... (-20.49 = -19.86 + -0.63)
Location | 560,912 – 561,029 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 92.88 |
Mean single sequence MFE | -23.32 |
Consensus MFE | -19.01 |
Energy contribution | -18.70 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.05 |
Mean z-score | -1.65 |
Structure conservation index | 0.82 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611263 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 560912 117 - 1281640 UUUUGUUUACUUAUACUAAAUAUAAGAAACAUUUGUUGUCAUAUGGUAAAUAUUAUUUCAAGUGAGAAACUAAGAGCAUACGAUUGUGCAAAAUGUGUUGAGUAUUUCCGAACACAC ...(((((....(((((.((((((.....((((((..((.((((.....)))).))..))))))...........(((((....)))))....)))))).)))))....)))))... ( -22.20) >DroSec_CAF1 8591 117 - 1 UUUUGUUUACUUAUACUAAAUAUAAGAAACAUUUGUUGUCAUAUGGUAAAUAUUAUUUCAAUUGAGAAACUAAGAGCAUACGAUUGUGCAAAAUGUGUUUAGUAUUUCCGAACACAC ...(((((....((((((((((((.....((.(((..((.((((.....)))).))..))).))...........(((((....)))))....))))))))))))....)))))... ( -22.90) >DroSim_CAF1 11442 117 - 1 UUUUGUUUACUUAUACUAAAUAUAAGAAACAUUUGUUGUCAUAUGGUAAAUAUUAUUUCAAUUGAGAAACUAAGAGCAUACGAUUGUGCAAAAUGUGUUUAGUAUUUCGGAACACAC ...(((((....((((((((((((.....((.(((..((.((((.....)))).))..))).))...........(((((....)))))....))))))))))))....)))))... ( -24.00) >DroEre_CAF1 13782 117 - 1 UUUUGUUUACUUAUACUGAAUAUAAGAAACAUUUGUUGUUGUAUAGUGAAUAUUAUUUCAAUGAAGAAACUAAGAACAUACAACUGGGCAAAAUGUGUUUAGUAUUACUCAACACAC ...(((((.((((((.....)))))))))))(((((.(((((((.((.....(((((((......)))).)))..)))))))))...))))).((((((.((.....)).)))))). ( -24.20) >consensus UUUUGUUUACUUAUACUAAAUAUAAGAAACAUUUGUUGUCAUAUGGUAAAUAUUAUUUCAAUUGAGAAACUAAGAGCAUACGAUUGUGCAAAAUGUGUUUAGUAUUUCCGAACACAC ...(((((.((((((.....)))))))))))(((((.(((.((((.(.....(((((((......)))).))).).)))).)))...))))).((((((..(.....)..)))))). (-19.01 = -18.70 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:40 2006