Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 551,681 – 551,783 |
Length | 102 |
Max. P | 0.854946 |
Location | 551,681 – 551,783 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 79.61 |
Mean single sequence MFE | -34.53 |
Consensus MFE | -21.13 |
Energy contribution | -21.91 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.12 |
Mean z-score | -2.07 |
Structure conservation index | 0.61 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.854946 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 551681 102 - 1281640 UGCAUUAUAUUAAGCAUAUCGACCGGGUUAAUUGGAAGUCCCGCUGCGGCAGCAACUGCUCCAAAAUGCUGUUGUAUAUGCUGAAGAUUUUGUA---------GACCCUUA ((((..((....(((((((((((.(.(((..(((((.((...((((...))))....)))))))))).).)))).)))))))....))..))))---------........ ( -26.40) >DroPse_CAF1 5239 111 - 1 UGCAUUAGGUUGAGCAUAUCCACCGGGUUAAUGGGCAUUCCCGAAGAUGCAGCAACUGCACUAAAUUGCUGCUGCAUAUGCUGCAGAUUUUGGAGAUUCUGUAGGCCCUGC .(((...(((.((.....)).)))((((..(((((.((..((((((.(((((((..((((.((......)).))))..)))))))..))))))..)))))))..))))))) ( -38.30) >DroSec_CAF1 274 102 - 1 UGCAUUAUAUUAAGCAUAUCGACCGGGUUAAUUGGAAGACCCGAUGCGGCAGCAACUGCUCCGAAAUGCUGUUGUAUAUGCUGAAGAUUUUGUA---------GACCCUUA ((((..((....(((((((((((((((((........))))))...(((.(((....)))))).......)))).)))))))....))..))))---------........ ( -31.60) >DroSim_CAF1 3364 102 - 1 UGCAUUAUAUUAAGCAUAUCGACCGGGUUAAUUGGAAGACCCGAUGCGGCAGCAACUGCUCCGAAAUGCUGUUGUAUAUGCUGAAGAUUUUGUA---------GACCCUUA ((((..((....(((((((((((((((((........))))))...(((.(((....)))))).......)))).)))))))....))..))))---------........ ( -31.60) >DroWil_CAF1 324 111 - 1 UGCAUAAGAUUCAGCAUAUCCACGGGGUUGAUGGGCAUUCCCGAGGCAGCCGCAGCAGCGCUCAACUGCUGUUGCAUAUGCUGUAGGUUUUGUAGAUUUUGCAGCCCCUGC ...........((((((((......(((((.((((....))))...)))))(((((((((......)))))))))))))))))((((..((((((...))))))..)))). ( -41.00) >DroPer_CAF1 6861 111 - 1 UGCAUUAGGUUGAGCAUAUCCACCGGGUUAAUGGGCAUUCCCGAAGAUGCAGCAACUGCACUAAAUUGCUGCUGCAUAUGCUGCAGAUUUUGGAGAUUCUGUAGGCCCUGC .(((...(((.((.....)).)))((((..(((((.((..((((((.(((((((..((((.((......)).))))..)))))))..))))))..)))))))..))))))) ( -38.30) >consensus UGCAUUAGAUUAAGCAUAUCCACCGGGUUAAUGGGAAGUCCCGAUGCGGCAGCAACUGCUCCAAAAUGCUGUUGCAUAUGCUGAAGAUUUUGUA_________GACCCUGA ((((........(((((((....((((............))))..(((((((((............))))))))))))))))........))))................. (-21.13 = -21.91 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:37 2006