Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 524,186 – 524,306 |
Length | 120 |
Max. P | 0.627871 |
Location | 524,186 – 524,306 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.11 |
Mean single sequence MFE | -28.22 |
Consensus MFE | -21.31 |
Energy contribution | -22.50 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.08 |
Mean z-score | -1.68 |
Structure conservation index | 0.76 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627871 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 524186 120 - 1281640 CCUUGCUGUUUUUGUUUUUGCACUUAUGUAUGUUUGCGAGCGUUUAGACUUGGAGUAAGUUGGGUUAUUAGCUAGUUCAAUCGUGAAUUACUUUAAGUUAGCGGCGAUAGUUUGUACUAU ..((((((((......((((((..((....))..))))))......(((((((((((((((((....)))))).(((((....))))))))))))))))))))))))((((....)))). ( -27.80) >DroSec_CAF1 30475 116 - 1 GCUUGCUGAUUUUGUUUUUGCACUUAU----GUUUGCGUGCGUUUAGACUUGGAGUAAGUUGGGUUAUUAGCUAGUUCAAUCGUGAAUUACUUUAAGUUAGCGGCGAUAGUUUGUACUAU (((.(((............((((.((.----...)).)))).....(((((((((((((((((....)))))).(((((....)))))))))))))))))))))).(((((....))))) ( -27.90) >DroSim_CAF1 31325 116 - 1 GCUUGCUGAUUUUGUUUUUGCACUUAU----GUUUGCGUGCGUUUAGACUUGGAGUAAGUUGGGUUAUUAGCUAGUUCAAUCGUGAAUUACUUUAAGUUAGCGGCGAUAGUUUGUACUAU (((.(((............((((.((.----...)).)))).....(((((((((((((((((....)))))).(((((....)))))))))))))))))))))).(((((....))))) ( -27.90) >DroYak_CAF1 38315 112 - 1 GCUUGAUGUUUUUGUGUUUGCACAUAU--------GCGUUUGUUUAGACUUGGAGUAUGUUUCGUUAUUAGCUAGUUCAAUUAUGAAUUACUUCAAGUCAGCGGCGAUAGUUUGUACUAU (((.(((((...((((....))))...--------)))))......(((((((((((...(((((.(((((....)).))).))))).))))))))))))))....(((((....))))) ( -29.30) >consensus GCUUGCUGAUUUUGUUUUUGCACUUAU____GUUUGCGUGCGUUUAGACUUGGAGUAAGUUGGGUUAUUAGCUAGUUCAAUCGUGAAUUACUUUAAGUUAGCGGCGAUAGUUUGUACUAU ..((((((...........((((.((........)).)))).....(((((((((((((((((....)))))).(((((....))))))))))))))))..))))))((((....)))). (-21.31 = -22.50 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:20 2006