Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 523,607 – 523,857 |
Length | 250 |
Max. P | 0.982435 |
Location | 523,607 – 523,701 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 80.15 |
Mean single sequence MFE | -15.30 |
Consensus MFE | -13.92 |
Energy contribution | -13.70 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.08 |
Mean z-score | -1.57 |
Structure conservation index | 0.91 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968828 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 523607 94 - 1281640 CAGUCAGUUGGCAACACAAAAGUAGUUUUGCCAAGGACUUUACCACUUUAUCACUGUACAUACAUAUAUGGCUCCAGUUUUUUGAAAGAAUGAU .((((..(((((((.((.......)).))))))).))))......((((...((((..((((....))))....))))......))))...... ( -18.60) >DroSec_CAF1 29914 74 - 1 CAGUCAGUUGGCGACACAAAAGUAGUUUUGCCAAGGACUUUACCACCUUAUAA--------------------CCACUUUUUUUAAAUAAUGAU .((((..(((((((.((.......)).))))))).))))..............--------------------..................... ( -13.50) >DroSim_CAF1 30764 74 - 1 CAGUCAGUUGGCAACACAAAAGUAGUUUUGCCAAGGACUUUACCACCUUAUAA--------------------CCACUUUUUUUAAAUAAUGAU .((((..(((((((.((.......)).))))))).))))..............--------------------..................... ( -13.80) >consensus CAGUCAGUUGGCAACACAAAAGUAGUUUUGCCAAGGACUUUACCACCUUAUAA____________________CCACUUUUUUUAAAUAAUGAU .((((..(((((((.((.......)).))))))).))))....................................................... (-13.92 = -13.70 + -0.22)
Location | 523,634 – 523,741 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.34 |
Mean single sequence MFE | -32.12 |
Consensus MFE | -22.75 |
Energy contribution | -22.75 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.14 |
Mean z-score | -2.34 |
Structure conservation index | 0.71 |
SVM decision value | 1.91 |
SVM RNA-class probability | 0.982435 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 523634 107 + 1281640 AUAUGUAUGUACAGUGAUAAAG-------------UGGUAAAGUCCUUGGCAAAACUACUUUUGUGUUGCCAACUGACUGCUGUGGGUCGAUCACCUUUCGACUGUCACCUGCCACUGGU ....................((-------------(((((.((((.(((((((.((.......)).)))))))..))))...(((((((((.......))))))..))).)))))))... ( -31.50) >DroSec_CAF1 29935 93 + 1 --------------UUAUAAGG-------------UGGUAAAGUCCUUGGCAAAACUACUUUUGUGUCGCCAACUGACUGCUGUGGGUCGAUCACCUUUCGACUGUCACCUGCCACCGGU --------------......((-------------(((((.((((.(((((...((.......))...)))))..))))...(((((((((.......))))))..))).)))))))... ( -31.20) >DroSim_CAF1 30785 93 + 1 --------------UUAUAAGG-------------UGGUAAAGUCCUUGGCAAAACUACUUUUGUGUUGCCAACUGACUGCUGUGGGUCGAUCACCUUUCGACUGUCACCUGCCACCGGU --------------......((-------------(((((.((((.(((((((.((.......)).)))))))..))))...(((((((((.......))))))..))).)))))))... ( -34.10) >DroYak_CAF1 37747 104 + 1 --------------UCA--AGAUCGGACCUAUUCACGAUCGAGUCCUUGGCGAAACCACUUUUGUGUUGCCAACUGGCUGCAGUAGGUCGAUCACCUUUCGACUGUCACCUGCCACUGGU --------------...--.(((((((.....)).))))).......((((((...(((....)))))))))((..(..((((..((((((.......)))))).....))))..)..)) ( -31.70) >consensus ______________UUAUAAGG_____________UGGUAAAGUCCUUGGCAAAACUACUUUUGUGUUGCCAACUGACUGCUGUGGGUCGAUCACCUUUCGACUGUCACCUGCCACCGGU ...................................((((..((((.(((((((.((.......)).)))))))..))))((.(((((((((.......))))))..)))..)).)))).. (-22.75 = -22.75 + 0.00)
Location | 523,634 – 523,741 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.34 |
Mean single sequence MFE | -29.50 |
Consensus MFE | -22.91 |
Energy contribution | -23.10 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.09 |
Mean z-score | -1.69 |
Structure conservation index | 0.78 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788860 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 523634 107 - 1281640 ACCAGUGGCAGGUGACAGUCGAAAGGUGAUCGACCCACAGCAGUCAGUUGGCAACACAAAAGUAGUUUUGCCAAGGACUUUACCA-------------CUUUAUCACUGUACAUACAUAU ..((((((.(((((...(((((.......))))).......((((..(((((((.((.......)).))))))).))))....))-------------)))..))))))........... ( -29.30) >DroSec_CAF1 29935 93 - 1 ACCGGUGGCAGGUGACAGUCGAAAGGUGAUCGACCCACAGCAGUCAGUUGGCGACACAAAAGUAGUUUUGCCAAGGACUUUACCA-------------CCUUAUAA-------------- ...(((((...(((...(((((.......))))).)))...((((..(((((((.((.......)).))))))).))))...)))-------------))......-------------- ( -29.30) >DroSim_CAF1 30785 93 - 1 ACCGGUGGCAGGUGACAGUCGAAAGGUGAUCGACCCACAGCAGUCAGUUGGCAACACAAAAGUAGUUUUGCCAAGGACUUUACCA-------------CCUUAUAA-------------- ...(((((...(((...(((((.......))))).)))...((((..(((((((.((.......)).))))))).))))...)))-------------))......-------------- ( -29.60) >DroYak_CAF1 37747 104 - 1 ACCAGUGGCAGGUGACAGUCGAAAGGUGAUCGACCUACUGCAGCCAGUUGGCAACACAAAAGUGGUUUCGCCAAGGACUCGAUCGUGAAUAGGUCCGAUCU--UGA-------------- (((..((((.(....).))))...)))((((((((((.....(((....)))..(((.....(((.....)))..((.....)))))..))))).))))).--...-------------- ( -29.80) >consensus ACCAGUGGCAGGUGACAGUCGAAAGGUGAUCGACCCACAGCAGUCAGUUGGCAACACAAAAGUAGUUUUGCCAAGGACUUUACCA_____________CCUUAUAA______________ ....((((..(....).(((((.......)))))))))...((((..(((((((.((.......)).))))))).))))......................................... (-22.91 = -23.10 + 0.19)
Location | 523,661 – 523,777 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.25 |
Mean single sequence MFE | -30.57 |
Consensus MFE | -28.44 |
Energy contribution | -28.62 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.07 |
Mean z-score | -1.94 |
Structure conservation index | 0.93 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956648 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 523661 116 + 1281640 AAGUCCUUGGCAAAACUACUUUUGUGUUGCCAACUGACUGCUGUGGGUCGAUCACCUUUCGACUGUCACCUGCCACUGGUCACGGCAAUUUCACCCGCAUACACCUGUAUACAU----AU .((((.(((((((.((.......)).)))))))..))))((((((((((((.......))))))...(((.......)))))))))..........(.((((....)))).)..----.. ( -33.70) >DroSec_CAF1 29948 120 + 1 AAGUCCUUGGCAAAACUACUUUUGUGUCGCCAACUGACUGCUGUGGGUCGAUCACCUUUCGACUGUCACCUGCCACCGGUCACGGCAAUUACACCCGCAUACACCUAUAUACAUACUUAU .((((.(((((...((.......))...)))))..))))((((((((((((.......))))))...(((.......))))))))).................................. ( -28.50) >DroSim_CAF1 30798 120 + 1 AAGUCCUUGGCAAAACUACUUUUGUGUUGCCAACUGACUGCUGUGGGUCGAUCACCUUUCGACUGUCACCUGCCACCGGUCACGGCAAUUACACCCGCAUACACCUAUAUACAUACUUAU .((((.(((((((.((.......)).)))))))..))))((((((((((((.......))))))...(((.......))))))))).................................. ( -31.40) >DroYak_CAF1 37771 108 + 1 GAGUCCUUGGCGAAACCACUUUUGUGUUGCCAACUGGCUGCAGUAGGUCGAUCACCUUUCGACUGUCACCUGCCACUGGUCACGGCAAUUACACCCGCAUACAUGUAU------------ .........(((....(((....)))(((((.((..(..((((..((((((.......)))))).....))))..)..))...))))).......)))..........------------ ( -28.70) >consensus AAGUCCUUGGCAAAACUACUUUUGUGUUGCCAACUGACUGCUGUGGGUCGAUCACCUUUCGACUGUCACCUGCCACCGGUCACGGCAAUUACACCCGCAUACACCUAUAUACAU____AU .((((.(((((((.((.......)).)))))))..))))...(((((((((.......))))((((.(((.......))).))))........)))))...................... (-28.44 = -28.62 + 0.19)
Location | 523,741 – 523,857 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.03 |
Mean single sequence MFE | -23.40 |
Consensus MFE | -15.06 |
Energy contribution | -16.50 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.21 |
Mean z-score | -1.88 |
Structure conservation index | 0.64 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.621577 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 523741 116 + 1281640 CACGGCAAUUUCACCCGCAUACACCUGUAUACAU----AUGUACAUAAACUGGCACAUCAGGGUUUUUACUUAAUUGGGUUCUUUUUAAGCCUUGCUGUUGCCUGCCGGCUUCUCCCUAA ..(((((..................((((((...----.))))))......((((((.((((((((..((((....)))).......)))))))).)).)))))))))............ ( -27.80) >DroSec_CAF1 30028 120 + 1 CACGGCAAUUACACCCGCAUACACCUAUAUACAUACUUAUAUACAUACACUGGCACAUCUCGGUUUUUACUUAAUUGGGUUCUUUUUAAGCCUUGCUGUUGCCUGCCGUCUUCUCCCUAA .((((((..................((((((......))))))........((((((.(..(((((..((((....)))).......)))))..).)).))))))))))........... ( -21.10) >DroSim_CAF1 30878 120 + 1 CACGGCAAUUACACCCGCAUACACCUAUAUACAUACUUAUAUACAUACACUGGCACAUCUCGGUUUUUACUUAAUUGGGUUCUUUUUAAGCCUUGCUGUUGCCUGCCGUCUUCUCCCUAA .((((((..................((((((......))))))........((((((.(..(((((..((((....)))).......)))))..).)).))))))))))........... ( -21.10) >DroYak_CAF1 37851 108 + 1 CACGGCAAUUACACCCGCAUACAUGUAU------------AUACAUACACUUGCACAUCGGGGUUUUAACUUAAUUGGGUUCUUUUUGAACCUUAAGGUUUCCUGUCGUCUACUCCCUAA .(((((..........(((....(((((------------....)))))..)))......(((....(((((....((((((.....))))))..))))).))))))))........... ( -23.60) >consensus CACGGCAAUUACACCCGCAUACACCUAUAUACAU____AUAUACAUACACUGGCACAUCUCGGUUUUUACUUAAUUGGGUUCUUUUUAAGCCUUGCUGUUGCCUGCCGUCUUCUCCCUAA ..(((((..................((((((......))))))........((((((.((((((((..((((....)))).......)))))))).)).)))))))))............ (-15.06 = -16.50 + 1.44)
Location | 523,741 – 523,857 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.03 |
Mean single sequence MFE | -31.42 |
Consensus MFE | -18.64 |
Energy contribution | -19.70 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.16 |
Mean z-score | -2.34 |
Structure conservation index | 0.59 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590084 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 523741 116 - 1281640 UUAGGGAGAAGCCGGCAGGCAACAGCAAGGCUUAAAAAGAACCCAAUUAAGUAAAAACCCUGAUGUGCCAGUUUAUGUACAU----AUGUAUACAGGUGUAUGCGGGUGAAAUUGCCGUG ...(((..(((((.((.(....).))..)))))........)))......((((..((((..((((((........))))))----..((((((....))))))))))....)))).... ( -31.50) >DroSec_CAF1 30028 120 - 1 UUAGGGAGAAGACGGCAGGCAACAGCAAGGCUUAAAAAGAACCCAAUUAAGUAAAAACCGAGAUGUGCCAGUGUAUGUAUAUAAGUAUGUAUAUAGGUGUAUGCGGGUGUAAUUGCCGUG ...........(((((((...(((.....((((((...........)))))).....(((..(((..((.((((((((((....)))))))))).))..))).))).)))..))))))). ( -33.10) >DroSim_CAF1 30878 120 - 1 UUAGGGAGAAGACGGCAGGCAACAGCAAGGCUUAAAAAGAACCCAAUUAAGUAAAAACCGAGAUGUGCCAGUGUAUGUAUAUAAGUAUGUAUAUAGGUGUAUGCGGGUGUAAUUGCCGUG ...........(((((((...(((.....((((((...........)))))).....(((..(((..((.((((((((((....)))))))))).))..))).))).)))..))))))). ( -33.10) >DroYak_CAF1 37851 108 - 1 UUAGGGAGUAGACGACAGGAAACCUUAAGGUUCAAAAAGAACCCAAUUAAGUUAAAACCCCGAUGUGCAAGUGUAUGUAU------------AUACAUGUAUGCGGGUGUAAUUGCCGUG ...((.(((....(((.(....).....(((((.....))))).......)))...((((((.((((((.(((((....)------------)))).)))))))))).)).))).))... ( -28.00) >consensus UUAGGGAGAAGACGGCAGGCAACAGCAAGGCUUAAAAAGAACCCAAUUAAGUAAAAACCCAGAUGUGCCAGUGUAUGUAUAU____AUGUAUAUAGGUGUAUGCGGGUGUAAUUGCCGUG ...........(((((((((....))..............((((..................((((((........))))))......((((((....))))))))))....))))))). (-18.64 = -19.70 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:18 2006