Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 523,188 – 523,302 |
Length | 114 |
Max. P | 0.926574 |
Location | 523,188 – 523,302 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 98.83 |
Mean single sequence MFE | -34.57 |
Consensus MFE | -31.15 |
Energy contribution | -32.43 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.03 |
Mean z-score | -2.89 |
Structure conservation index | 0.90 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926574 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 523188 114 + 1281640 GGGGUGGGCGGAUGGCAAGUGAUGGGAGGGAAAGGAAGCAGAACUUCCCACUUGUGAUUGUGCUUGUGACUGUGCGUGUGUGAAAAUGUGUGUAUAAAAAAGAGACAACUGUCU (..(..(((((((.((((((...((((((....(....)....)))))))))))).))).))))..)..)((((((..(((....)))..))))))......((((....)))) ( -35.50) >DroSec_CAF1 29436 114 + 1 GGGGUGGGCGGAUGGCAAGUGAUGGGAGGGAAAGGAAGCAGAACUUCCCACUUGUGACUGUGUUUGUGACUGUGCGUGUGUGAAAAUGUGUGUAUAAAAAAGAGACAACUGUCU .(((..(((((.(.((((((...((((((....(....)....)))))))))))).)))))((((.(...((((((..(((....)))..))))))....).))))..)..))) ( -34.10) >DroSim_CAF1 30285 114 + 1 GGGGUGGGCGGAUGGCAAGUGAUGGGAGGGAAAGGAAGCAGAACUUCCCACUUGUGACUGUGUUUGUGACUGUGCGUGUGUGAAAAUGUGUGUAUAAAAAAGAGACAACUGUCU .(((..(((((.(.((((((...((((((....(....)....)))))))))))).)))))((((.(...((((((..(((....)))..))))))....).))))..)..))) ( -34.10) >consensus GGGGUGGGCGGAUGGCAAGUGAUGGGAGGGAAAGGAAGCAGAACUUCCCACUUGUGACUGUGUUUGUGACUGUGCGUGUGUGAAAAUGUGUGUAUAAAAAAGAGACAACUGUCU (..(..((((.((.((((((...((((((....(....)....)))))))))))).).).))))..)..)((((((..(((....)))..))))))......((((....)))) (-31.15 = -32.43 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:11 2006