Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 518,113 – 518,233 |
Length | 120 |
Max. P | 0.524088 |
Location | 518,113 – 518,233 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.39 |
Mean single sequence MFE | -23.10 |
Consensus MFE | -17.62 |
Energy contribution | -18.75 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.59 |
Structure conservation index | 0.76 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524088 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 518113 120 + 1281640 UCACCUGUAUUUACUUAAAAUAUCCAAACACAAAAACCUUUGCAUACUGCAUAUCUCAGUUUGUAUGUUGACAAGGGAAUGUGUACCCAACACGGUAAUUGUACAUAAGCAUGUGAUAAA ((((.(((............................((((((((....((((((........)))))))).))))))..(((((((((.....)).....))))))).))).)))).... ( -22.70) >DroSec_CAF1 24094 120 + 1 UCACCUGUAUUUACUUAAAAUAUCCAAACACAAAAGCCUUUGCAUACUGCAUAUCUCAGUUUGUAUGCUUAGAAGGGAAUGUGUACCCAACACGGUAAUUGUACAUAAGCAUGUGAUAAA ((((.(((............................(((((((((((.((........))..))))))...)))))...(((((((((.....)).....))))))).))).)))).... ( -24.10) >DroSim_CAF1 24048 120 + 1 UCACCUGUAUUUACUUAAAAUAUCCAAACACAAAAGCCUUUGCAUACUGCAUAUCUCAGUUUGUAUGUUUACAAGGGAAUGUGUACCCAACACGGUAAUUGUACAUAAGCAUGUGAUAAA ((((.(((...................(((((....(((((((((((.((........))..)))))....))))))..)))))(((......)))............))).)))).... ( -22.60) >DroYak_CAF1 30818 112 + 1 UCACCUGUAUUUACUUAAAAUAUCUAAACACAAAAGCGUUUGCAUACUGCAUAUCUGAGUUUGUAUGUUU--------AUGUGUACCCAACGCGGUAAUUCUACAUAGACAUAAGAUAAA ....................(((((....(((((..((..(((.....)))....))..)))))((((((--------(((((((((......))))....))))))))))).))))).. ( -23.00) >consensus UCACCUGUAUUUACUUAAAAUAUCCAAACACAAAAGCCUUUGCAUACUGCAUAUCUCAGUUUGUAUGUUUACAAGGGAAUGUGUACCCAACACGGUAAUUGUACAUAAGCAUGUGAUAAA ((((.(((...................(((((....((((.((((((.((........))..))))))....))))...)))))(((......)))............))).)))).... (-17.62 = -18.75 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:06 2006