Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 517,921 – 518,038 |
Length | 117 |
Max. P | 0.547085 |
Location | 517,921 – 518,038 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 87.32 |
Mean single sequence MFE | -25.40 |
Consensus MFE | -17.05 |
Energy contribution | -19.80 |
Covariance contribution | 2.75 |
Combinations/Pair | 1.06 |
Mean z-score | -1.63 |
Structure conservation index | 0.67 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547085 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 517921 117 + 1281640 ACACGGUUGUUGGGUUUUGGGUUUAAUACAGAAAAUACAAAUGCAAUAACAUGCAUAGGCAUACCGAUGAAUAAUUUAAAUAUUGAUCUGUUCGACUUUAAGUACAAGAACCCGUGA .(((((((.(((..(((..((((....(((((.((((...(((((......))))).((....))...............))))..)))))..))))..)))..))).)).))))). ( -27.40) >DroSec_CAF1 23901 117 + 1 ACAUGGUUUUUGGGUUUCGGGUUUAUGACAGAAAAUACAAAUGCAAUGACAUGCAUAGGCAUACCGAUGAAUAAUUUAAAUAUUGAUCUGUUCGACUUUAAAUACAAGAACCCGUGA .(((((((((((..(((..((((...((((((.((((...(((((......))))).((....))...............))))..)))))).))))..)))..)))))).))))). ( -28.50) >DroSim_CAF1 23855 117 + 1 ACAUGGUUUUUGGGUUUCGGGUUUAUGACAGAAAAUACAAAUGCACUGACAUGCAUAGGCAUACCGAUGAAUAAUUUAAAUAUUGAUCUGUUCGACUUUAAAUACAAGAACCCGUGA .(((((((((((..(((..((((...((((((.((((...(((((......))))).((....))...............))))..)))))).))))..)))..)))))).))))). ( -28.30) >DroYak_CAF1 30636 106 + 1 ACAUGGUUUAUGG-------GAUUAAUACAGCAAAUACGAAUGCA----CGUGCAAUGGCAUAACUAUGAAUAAUUUAAAUAUUGAUCUGUUCGACUUCAAAUACAAGAACCCCUGA ....(((((.(((-------((((((((..(((........))).----.((((....))))..................)))))))))....(....).....)).)))))..... ( -17.40) >consensus ACAUGGUUUUUGGGUUUCGGGUUUAAGACAGAAAAUACAAAUGCAAUGACAUGCAUAGGCAUACCGAUGAAUAAUUUAAAUAUUGAUCUGUUCGACUUUAAAUACAAGAACCCGUGA .(((((((((((..(((..((((...((((((.((((...(((((......)))))...(((....)))...........))))..)))))).))))..)))..)))))).))))). (-17.05 = -19.80 + 2.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:04 2006