Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 514,431 – 514,530 |
Length | 99 |
Max. P | 0.640257 |
Location | 514,431 – 514,530 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 97.98 |
Mean single sequence MFE | -21.53 |
Consensus MFE | -20.89 |
Energy contribution | -20.67 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.59 |
Structure conservation index | 0.97 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.640257 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 514431 99 + 1281640 AAUAACAAAUAACGCCCGCAUUUGUUUUCGCAUCCAUUUGGGAUAAUGAAGCGCAACCCAUUGAAUUUUAAUUUGGCACUUAACAAAUUCAAUGGGAAA ................(((.((..((.((.((......)).)).))..)))))...(((((((((((((((........)))..))))))))))))... ( -23.20) >DroSec_CAF1 20907 99 + 1 AAUAACAAAUAACGCCCGCAUUUGUUUUCGCAUCCAUUUGGGAUAAUGAAGCGCAACCCAUUGAAUUUUAAUUUGGCACUUGACGACUUCAAUGGGAAA ................(((.((..((.((.((......)).)).))..)))))...(((((((((..((((........))))....)))))))))... ( -20.70) >DroSim_CAF1 20901 99 + 1 AAUAACAAAUAACGCCCGCAUUUGUUUUCGCAUCCAUUUGGGAUAAUGAAGCGCAACCCAUUGAAUUUUAAUUUGGCACUUGACGACUUCAAUGGGAAA ................(((.((..((.((.((......)).)).))..)))))...(((((((((..((((........))))....)))))))))... ( -20.70) >consensus AAUAACAAAUAACGCCCGCAUUUGUUUUCGCAUCCAUUUGGGAUAAUGAAGCGCAACCCAUUGAAUUUUAAUUUGGCACUUGACGACUUCAAUGGGAAA ................(((.((..((.((.((......)).)).))..)))))...(((((((((..((((........))))....)))))))))... (-20.89 = -20.67 + -0.22)
Location | 514,431 – 514,530 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 97.98 |
Mean single sequence MFE | -24.03 |
Consensus MFE | -22.58 |
Energy contribution | -22.58 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.63 |
Structure conservation index | 0.94 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580975 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 514431 99 - 1281640 UUUCCCAUUGAAUUUGUUAAGUGCCAAAUUAAAAUUCAAUGGGUUGCGCUUCAUUAUCCCAAAUGGAUGCGAAAACAAAUGCGGGCGUUAUUUGUUAUU ...((((((((((((................))))))))))))(((((.((((((......))))))))))).(((((((((....).))))))))... ( -26.39) >DroSec_CAF1 20907 99 - 1 UUUCCCAUUGAAGUCGUCAAGUGCCAAAUUAAAAUUCAAUGGGUUGCGCUUCAUUAUCCCAAAUGGAUGCGAAAACAAAUGCGGGCGUUAUUUGUUAUU ...(((((((((......................)))))))))(((((.((((((......))))))))))).(((((((((....).))))))))... ( -22.85) >DroSim_CAF1 20901 99 - 1 UUUCCCAUUGAAGUCGUCAAGUGCCAAAUUAAAAUUCAAUGGGUUGCGCUUCAUUAUCCCAAAUGGAUGCGAAAACAAAUGCGGGCGUUAUUUGUUAUU ...(((((((((......................)))))))))(((((.((((((......))))))))))).(((((((((....).))))))))... ( -22.85) >consensus UUUCCCAUUGAAGUCGUCAAGUGCCAAAUUAAAAUUCAAUGGGUUGCGCUUCAUUAUCCCAAAUGGAUGCGAAAACAAAUGCGGGCGUUAUUUGUUAUU ...(((((((((......................)))))))))(((((.((((((......))))))))))).(((((((((....).))))))))... (-22.58 = -22.58 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:00 2006