Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 509,639 – 509,758 |
Length | 119 |
Max. P | 0.884573 |
Location | 509,639 – 509,758 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.40 |
Mean single sequence MFE | -35.67 |
Consensus MFE | -29.83 |
Energy contribution | -30.64 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.04 |
Mean z-score | -2.62 |
Structure conservation index | 0.84 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.884573 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 509639 119 - 1281640 AUUCCCGAACCAACGUUGCGGACCCCCGUUACGAGCGCACAAAAAAAACUACCCCGACAAAAUUAUAAUGAAGUUGGUGGUGGUGCAGAGGAAAG-CCAAGUGUGCGUCGAAAACAGGGU ...(((.......(((.((((....)))).))).((((((.......(((((((((((..............))))).)))))).....((....-))..))))))..........))). ( -38.54) >DroSec_CAF1 15981 119 - 1 AUUCCCGAACCAACGUUGCGGACCACCGUUACGAGCGCACAAAAAAAACUACCCCGACAAAAUUAUAAUGAAGUUGGUGGUGGUGCAGAGGAAAG-CAAAGUGUGCGUCGAAAACAGGGU ...(((.......(((.((((....)))).))).((((((.......(((((((((((..............))))).))))))((........)-)...))))))..........))). ( -38.24) >DroSim_CAF1 16064 119 - 1 AUUCCCGAACCAACGUUGCGGACCACCGUUACGAGCGCACAAAAAAAACUACCCCGACAAAAUUAUAAUGAAGUUGGUGGUGGUGCAGAGGAAAG-CAAAGUGUGCGUCGAAAACAGGGU ...(((.......(((.((((....)))).))).((((((.......(((((((((((..............))))).))))))((........)-)...))))))..........))). ( -38.24) >DroYak_CAF1 21527 120 - 1 AUUCCCGAACCAACGUUGCAAACAACCGUCAUAAGCGAACAAAAAAAACUACCCCGACAAAAUUAUAAUGAAGUUGGUGGUGGUGCAGAGGAAAGGCAAAGUGUGCGUUGAAAACAGGGU ...(((....((((.((((.......(((.....)))..........(((((((((((..............))))).)))))))))).......(((.....)))))))......))). ( -27.64) >consensus AUUCCCGAACCAACGUUGCGGACCACCGUUACGAGCGCACAAAAAAAACUACCCCGACAAAAUUAUAAUGAAGUUGGUGGUGGUGCAGAGGAAAG_CAAAGUGUGCGUCGAAAACAGGGU ...(((.......(((.((((....)))).))).(((((((......(((((((((((..............))))).)))))).................)))))))........))). (-29.83 = -30.64 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:52 2006