Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 509,486 – 509,602 |
Length | 116 |
Max. P | 0.950971 |
Location | 509,486 – 509,602 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.49 |
Mean single sequence MFE | -43.25 |
Consensus MFE | -41.14 |
Energy contribution | -41.08 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.11 |
Mean z-score | -1.86 |
Structure conservation index | 0.95 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.950971 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 509486 116 - 1281640 ----AGGUCCUGGGCAAGGGACCAAGAGAUUCGGGUGGAGUGGGCUUUCUUUGCCACCUUUCUUCCGCCUGCUUGUGCAGUUGGAACACCACCACCCUGGGUUAAAAUUAAAAAAAGCGA ----.((((((......))))))....(((((((((((.((((((.......))).......(((((.((((....)))).))))))))..)))))).)))))................. ( -43.50) >DroSec_CAF1 15822 119 - 1 UCCGGGGUCCUGGGCACGGGACCAAGAGAAUCGGGUGGAGUGGGCUUUCUUUGCCACCUUCCUUCCGCCUGCUUGUGCAGUUGGAACACCACCACCCUGGGUUAAAAUUAAA-AAAGCGA ((((.(((((((....))))))).........((((((.((((((.......))).......(((((.((((....)))).))))))))..))))))))))...........-....... ( -45.90) >DroSim_CAF1 15905 119 - 1 UCCGGGGUCCUGGGCACGGGACCAAGAGAAUCGGGUGGAGUGGGCUUUCUUUGCCACCUUCCUUCCGCCUGCUUGUGCAGUUGGAACACCACCACCCUGGGUUAAAAUUAAA-AAAGCGA ((((.(((((((....))))))).........((((((.((((((.......))).......(((((.((((....)))).))))))))..))))))))))...........-....... ( -45.90) >DroYak_CAF1 21370 118 - 1 ACCUGGGUUCUGGGCACGGGACCAAGAGAAUCGGGCGGAGUGGGCUUUCCUUGCCACCUUCCUUUCGUCUGCUUGUGCAGUCGGAACACCACCACCCUGAA-AAAAAUUAAA-AAAGCGA ..((.(((((((....))))))).))....(((((.(..((((((.......))).......(((((.((((....)))).)))))...)))..)))))).-..........-....... ( -37.70) >consensus UCCGGGGUCCUGGGCACGGGACCAAGAGAAUCGGGUGGAGUGGGCUUUCUUUGCCACCUUCCUUCCGCCUGCUUGUGCAGUUGGAACACCACCACCCUGGGUUAAAAUUAAA_AAAGCGA .....(((((((....))))))).........((((((.((((((.......))).......(((((.((((....)))).))))))))..))))))....................... (-41.14 = -41.08 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:50 2006