Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 507,430 – 507,550 |
Length | 120 |
Max. P | 0.933015 |
Location | 507,430 – 507,550 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.83 |
Mean single sequence MFE | -28.11 |
Consensus MFE | -19.16 |
Energy contribution | -19.47 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.07 |
Mean z-score | -2.05 |
Structure conservation index | 0.68 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933015 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 507430 120 - 1281640 CCGGUCACGAAAACAGUCCCUGAAUCAUAGAUUAGGAGACAUACAUAUGUUUUUUCCAACAUAGAAGACCUUCUUCUUGAAAUCUUUGAUUUAGGAUUUCUUUAGGGACCAGAGUCACAG ..((((...(((..(((((.(((((((.(((((.((((((((....)))))...)))..((.(((((.....))))))).))))).))))))))))))..)))...)))).......... ( -34.10) >DroSec_CAF1 13731 93 - 1 GCGGUCACGAAAACAGUCCCUGAAGCAUAGAUUCGGAGACAUACUU--------------------------AUUCUUGACAUCUUUGAUUCAGGAUUU-UUUACUGACCAGAGUCACAG ..(((((..((((.(((((.((((.((.(((((((.(((.......--------------------------..)))))).)))).)).))))))))))-)))..))))).......... ( -22.60) >DroSim_CAF1 13732 119 - 1 GCGGUCACGAAAACAGUCCCUGAAGCAUAGAUUCGGAGACAUACUUAUAUUUUUUCCAAUAUAGAGGACCUUAUUCUUGACAUCUUUGAUUCAGGAUUU-UUUAAUGACCAGAGUCACAG ..(((((..((((.(((((.((((.((.(((((((((((.............)))))......(((((.....))))))).)))).)).))))))))))-)))..))))).......... ( -27.62) >consensus GCGGUCACGAAAACAGUCCCUGAAGCAUAGAUUCGGAGACAUACUUAU_UUUUUUCCAA_AUAGA_GACCUUAUUCUUGACAUCUUUGAUUCAGGAUUU_UUUAAUGACCAGAGUCACAG ..((((...(((..(((((.((((.((.((((..(....).....((((((......))))))..................)))).)).)))))))))..)))...)))).......... (-19.16 = -19.47 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:49 2006