Locus 57

Sequence ID 4_DroMel_CAF1
Location 507,430 – 507,550
Length 120
Max. P 0.933015
window87

overview

Window 7

Location 507,430 – 507,550
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 78.83
Mean single sequence MFE -28.11
Consensus MFE -19.16
Energy contribution -19.47
Covariance contribution 0.31
Combinations/Pair 1.07
Mean z-score -2.05
Structure conservation index 0.68
SVM decision value 1.23
SVM RNA-class probability 0.933015
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 507430 120 - 1281640
CCGGUCACGAAAACAGUCCCUGAAUCAUAGAUUAGGAGACAUACAUAUGUUUUUUCCAACAUAGAAGACCUUCUUCUUGAAAUCUUUGAUUUAGGAUUUCUUUAGGGACCAGAGUCACAG
..((((...(((..(((((.(((((((.(((((.((((((((....)))))...)))..((.(((((.....))))))).))))).))))))))))))..)))...)))).......... ( -34.10)
>DroSec_CAF1 13731 93 - 1
GCGGUCACGAAAACAGUCCCUGAAGCAUAGAUUCGGAGACAUACUU--------------------------AUUCUUGACAUCUUUGAUUCAGGAUUU-UUUACUGACCAGAGUCACAG
..(((((..((((.(((((.((((.((.(((((((.(((.......--------------------------..)))))).)))).)).))))))))))-)))..))))).......... ( -22.60)
>DroSim_CAF1 13732 119 - 1
GCGGUCACGAAAACAGUCCCUGAAGCAUAGAUUCGGAGACAUACUUAUAUUUUUUCCAAUAUAGAGGACCUUAUUCUUGACAUCUUUGAUUCAGGAUUU-UUUAAUGACCAGAGUCACAG
..(((((..((((.(((((.((((.((.(((((((((((.............)))))......(((((.....))))))).)))).)).))))))))))-)))..))))).......... ( -27.62)
>consensus
GCGGUCACGAAAACAGUCCCUGAAGCAUAGAUUCGGAGACAUACUUAU_UUUUUUCCAA_AUAGA_GACCUUAUUCUUGACAUCUUUGAUUCAGGAUUU_UUUAAUGACCAGAGUCACAG
..((((...(((..(((((.((((.((.((((..(....).....((((((......))))))..................)))).)).)))))))))..)))...)))).......... (-19.16 = -19.47 +   0.31) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:49 2006