Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 471,654 – 471,774 |
Length | 120 |
Max. P | 0.795289 |
Location | 471,654 – 471,774 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -27.49 |
Consensus MFE | -26.37 |
Energy contribution | -26.18 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.03 |
Mean z-score | -1.98 |
Structure conservation index | 0.96 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795289 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 471654 120 - 1281640 UUUGUGCAGGGAUCUACCUAUAAACAUCGGCUUACCGAAGUUAGGUUCCUUCACUGUUUUUAUAUAACACCUUUUAAAAUCUGUGCGAAAAGAUUAGCAUCAUUUUCGUCAUAAAACGGA ...(((.(((((((((.......((.((((....)))).))))))))))).)))((((.......))))..........(((((((((((((((....))).)))))))......))))) ( -27.01) >DroSec_CAF1 4692 120 - 1 UUUGUGCAGGGAUCUAUCUAUAAACAUCGGCUUACCGAAGUUAGGUUCCUUCACUGAUUUUAUAUAACACCUUUUAAAAUCUGUGCGAAAAGAUUAGCAUCAUUUUCGUCAUAAAACGGA ...(((.(((((((((.((.......((((....)))))).))))))))).))).(((((((............)))))))(((((((((((((....))).)))))).))))....... ( -29.41) >DroEre_CAF1 4100 120 - 1 UUUGUGCAGGGAUCUAUCUAUAAACAUCGGCUUACCGAAGUUAGGUUCCUUCACUGUUUUUAUAUAACACCUUUUAAAAUCUGUGCGAAAAGAUUAGCAUCAUUUUCGUCAUAAAAUGGA ...(((.(((((((((.((.......((((....)))))).))))))))).)))((((.......))))............(((((((((((((....))).)))))).))))....... ( -26.51) >DroYak_CAF1 4338 120 - 1 UUUGUGCAGGGAUCUAUCUAUAAACAUCGGCUUACCGAAGUUAGGUUCCUUCACUGUUUUUUUAUAACACCUUUUAAAAUCUGUGCGAAAAGAUUAGCAUCAUUUUCGUCAUAAAACGGA ...(((.(((((((((.((.......((((....)))))).))))))))).)))((((.......))))..........(((((((((((((((....))).)))))))......))))) ( -27.01) >consensus UUUGUGCAGGGAUCUAUCUAUAAACAUCGGCUUACCGAAGUUAGGUUCCUUCACUGUUUUUAUAUAACACCUUUUAAAAUCUGUGCGAAAAGAUUAGCAUCAUUUUCGUCAUAAAACGGA ...(((.(((((((((.......((.((((....)))).))))))))))).))).........................(((((((((((((((....))).)))))))......))))) (-26.37 = -26.18 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:40 2006