Locus 53

Sequence ID 4_DroMel_CAF1
Location 459,218 – 459,308
Length 90
Max. P 0.880339
window80

overview

Window 0

Location 459,218 – 459,308
Length 90
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 81.51
Mean single sequence MFE -24.95
Consensus MFE -17.96
Energy contribution -19.47
Covariance contribution 1.50
Combinations/Pair 1.19
Mean z-score -2.34
Structure conservation index 0.72
SVM decision value 0.91
SVM RNA-class probability 0.880339
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 459218 90 + 1281640
---------AUUUACCUCCAUCUGUAUAUUGGUAGAGCCCAUUUUAUAGGCGUUUAAUGCUGAAUUUGAAUUGCUUUGCAUAUGUGGAUGCGGGUUAAA---
---------....((((.((((..(((((..(((((((.((..((...(((((...))))).))..))....))))))))))))..)))).))))....--- ( -26.40)
>DroPse_CAF1 73859 101 + 1
AAAUCGGAAAU-UACCUCCAUGGCAAUAUUUGAAGAGGAUACUUUGUAGGCAUUCAAUGCUGUAUUUGUAUUGCUUUGCAUAUGUGGAUGUGGAUUAAAAUU
.....((....-..))((((((...((((.((.(((((((((......(((((...)))))......))))).)))).)).))))...))))))........ ( -19.90)
>DroSim_CAF1 51699 92 + 1
---------AU-UACCUCCAUCUGUAUAUUGGUAGAGCCUAUUUUAUAGGCGUUUAAUGCUGAAUUUGAAUUGCUUUGCAUAUGUGGAUGUGGGUUAAAAAU
---------..-.(((..((((..(((((..(((((((..((((....(((((...)))))......)))).))))))))))))..))))..)))....... ( -27.90)
>DroEre_CAF1 84534 92 + 1
---------AU-UACCUCCAUCUGUAUAUUGGUAGAGCCUAUUUUAUAGGCGUUUAAUGCUGAACUCGAAUUGCUUUGCAUAUGCGGGUGUGGGUUAAAAAU
---------..-.(((..(((((((((((..(((((((..((((....(((((...)))))......)))).))))))))))))))))))..)))....... ( -29.50)
>DroYak_CAF1 91520 92 + 1
---------AU-UACCUCCAUCUGUAUAUUGGUAGGGCCUAUUUUAUAGGUGUUUAAUGCUGAAUUCGAAUUGCUUUGCAUAUGCGGGUGUGGGUUAAAGAU
---------..-.(((..(((((((((((..(((((((..((((....(((((...)))))......)))).))))))))))))))))))..)))....... ( -26.10)
>DroPer_CAF1 72989 101 + 1
AAAUCGGAAAU-UACCUCCAUGGCAAUAUUUGAAGAGGAUACUUUGUAGGCAUUCAAUGCUGUAUUUGUAUUGCUUUGCAUAUGUGGAUGUGGAUUAAAAUU
.....((....-..))((((((...((((.((.(((((((((......(((((...)))))......))))).)))).)).))))...))))))........ ( -19.90)
>consensus
_________AU_UACCUCCAUCUGUAUAUUGGUAGAGCCUAUUUUAUAGGCGUUUAAUGCUGAAUUUGAAUUGCUUUGCAUAUGUGGAUGUGGGUUAAAAAU
.............(((..(((((((((((..(((((((..........(((((...)))))...........))))))))))))))))))..)))....... (-17.96 = -19.47 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:38 2006