Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 459,054 – 459,168 |
Length | 114 |
Max. P | 0.568413 |
Location | 459,054 – 459,168 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 83.57 |
Mean single sequence MFE | -37.52 |
Consensus MFE | -27.43 |
Energy contribution | -24.52 |
Covariance contribution | -2.91 |
Combinations/Pair | 1.54 |
Mean z-score | -1.72 |
Structure conservation index | 0.73 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568413 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 459054 114 + 1281640 GAAGUUUUGGGUCAUCUUGUUUGGUGGCGGCCGAUUGCCACUAUUGGGAUUUAGCGGAAUAUUAUCGGAGCGCCGACUAAAUUGUACGGAUCCACCUUGCGCUGAUGCUUGACG ...(((.((((((.....(((((((((((.(((((..((.(((........))).))......)))))..)))).)))))))......))))))......((....))..))). ( -34.50) >DroPse_CAF1 73695 114 + 1 AAAGUUCUGAGCCAUUUUAUUUGGUGGCGGGCGAUUACCACUGUUCGGAUUCAGUGGAAUAUUAUCAGAACGCCGAUUAAAUUGCACCUGACCACCAGGCGCAGAAUUUUGUCG ...(((((((((((((......)))))).........((((((........)))))).......)))))))..((((.(((((((.((((.....)))).)))..)))).)))) ( -40.50) >DroSim_CAF1 51533 114 + 1 GAAGUUUUGAGUCAUCUUGUUUGGCGGCGGCCGAUUGCCGCUAUUGGGAUUUAGCGGAAUAUUAUCGGAGCGCGGAGUAAAUUGUACGGAUCCACCUUGUGCUGAUGUUUGACG ..........((((......(..((((((.(((((..((((((........))))))......)))))..)))((((((.....)))...)))......)))..)....)))). ( -32.20) >DroEre_CAF1 84370 114 + 1 GAAGUUUUGAGUCAUCUUGCUAGGUGGCGGCUGAUUGCCGCUAUUCGGAUUUAGCGGGAUAUUAUCGGAGCGCCGACUAAAUUGUACGGAUCCUCCUUGUGCUGAAGAUUGACG ..((((((.(((.((((((((((((((((((.....))))))))......))))))))))......((((..(((((......)).)))...))))....))).)))))).... ( -40.10) >DroYak_CAF1 91356 114 + 1 GAAGUUUUGAGUCAUCUUGUUUGGUGGCGGCCGAUUCCCGCUGUUGGGAUUUAGCGGAAUAUUAUCGGAGCGCCGACUAAAUUGUACAGAUCCUCCUUGUGCUGAAGUUUGACG ..........((((.((((((((((((((.(((((..((((((........))))))......)))))..)))).))))))).((((((.......))))))..)))..)))). ( -37.30) >DroPer_CAF1 72825 114 + 1 AAAGUUCUGAGCCAUUUUAUUUGGUGGCGGGCGAUUACCACUGUUCGGAUUCAGUGGAAUAUUAUCAGAACGCCGAUUAAAUUGCACCUGACCACCAGGCGCAGAAUUUUGUCG ...(((((((((((((......)))))).........((((((........)))))).......)))))))..((((.(((((((.((((.....)))).)))..)))).)))) ( -40.50) >consensus GAAGUUUUGAGUCAUCUUGUUUGGUGGCGGCCGAUUGCCACUAUUCGGAUUUAGCGGAAUAUUAUCGGAGCGCCGACUAAAUUGUACGGAUCCACCUUGCGCUGAAGUUUGACG ...(((((((((((((......)))))).........((((((........)))))).......)))))))............((.(((.......))).))............ (-27.43 = -24.52 + -2.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:37 2006