Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 457,424 – 457,543 |
Length | 119 |
Max. P | 0.885329 |
Location | 457,424 – 457,543 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 91.60 |
Mean single sequence MFE | -24.80 |
Consensus MFE | -21.16 |
Energy contribution | -21.04 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.18 |
Mean z-score | -1.57 |
Structure conservation index | 0.85 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.885329 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 457424 119 - 1281640 ACUUAGGUGUUUUUACAACGGAGAAAAUAAACUUUUGGAUAUGCAAAUGAUAACGUUGGAAACAACAUAAUUCAUUUGCAACUUUUAGAAGUCACGUCGAAGUUAAAUGUAGAAUCUGU ...(((((...((((((((...((......(((((((((..(((((((((....((((....)))).....)))))))))...)))))))))....))...))....))))))))))). ( -30.00) >DroSec_CAF1 72934 119 - 1 ACGUAGGUGUUUUUACAACGGAGAAAAUAAACGUUUGGAUAUGCAAAUGAUAACGUUGGAAACAACAUAAUUUACUUGCAACUUUUAGAAGUAAUGUCGAAGUUAAAUGUAGAAUCUGU ..(((((....))))).(((((.........((((((......)))))).....((((....))))....(((((....((((((....(....)...))))))....))))).))))) ( -22.00) >DroSim_CAF1 49896 119 - 1 ACGUAGGUGUUUUUACAACGGAGAAAAUAAACGCUUGGAUAUGCAAAUGAUAACGUUGGAAACAACAUAAUUUACUUGCAACUUUUAGAAGUAAUGUCGAAGUUAAAUGUAGAAUCUGU ..(((((....))))).(((((..........((((.(((((((((.(((....((((....)))).....))).)))).((((....)))).))))).))))...........))))) ( -25.60) >DroEre_CAF1 82737 119 - 1 CCGUAGAUGUUUUUACAACGGAGAAAAUAAACAUUUGGAUAUGCAAAUGAUAACGUUGAAAACAGCAUAUUUCAUUUUCAACUUUUAGAAGUCACGUCUAAGUUAAAUGUAGAAUCUGU ..(((((....))))).(((((.........((((((......)))))).((((((((((((............))))))))..(((((.......))))))))).........))))) ( -20.60) >DroYak_CAF1 89723 119 - 1 CCGUAGAUGUUUUUACAACGGAGAAAAUUACCAUUUGGAUAUGCAAAUGAUAACGUUGGACACAACAUAUUUUAUUUGCAACUUGUAAAAGUCACAUCUAAGUUAAAUGUAGAAUCUGU ...(((((((((((((((.(..........((....))...(((((((((....((((....)))).....))))))))).)))))))))...)))))))................... ( -25.80) >consensus ACGUAGGUGUUUUUACAACGGAGAAAAUAAACAUUUGGAUAUGCAAAUGAUAACGUUGGAAACAACAUAAUUUAUUUGCAACUUUUAGAAGUCACGUCGAAGUUAAAUGUAGAAUCUGU ..(((((....))))).(((((..........((((.(((.(((((((((....((((....)))).....)))))))))((((....))))...))).))))...........))))) (-21.16 = -21.04 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:35 2006