| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 447,112 – 447,210 |
| Length | 98 |
| Max. P | 0.913868 |
| Location | 447,112 – 447,210 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 90.99 |
| Mean single sequence MFE | -34.30 |
| Consensus MFE | -29.54 |
| Energy contribution | -30.85 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.913868 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 447112 98 + 1281640 GACUGUGUCCUGUUCCUGCUCCUAGUCCUCAUUCUGGACGUUAGGUUACCGGACACUUGAUGGUCUGACCAAGGGGACGGGACACAUCGUGGAAACUG ((.((((((((((((((.......((((.......))))....(((...(((((.(.....)))))))))..))))))))))))))))..(....).. ( -40.10) >DroSec_CAF1 63904 98 + 1 GACUGUGUCGUUUUCCUGCUCCUAGUCCUCAUUCUGGACGUUAGGUUACCGGACACUUGAUGGUCUGACCAAGGGGACGGAACACAUCGAGGAAACUG ((.(((((.....(((..(((((.((((.......))))....(((...(((((.(.....))))))))).)))))..)))))))))).((....)). ( -31.20) >DroEre_CAF1 77131 98 + 1 GACUGUGUCCUGUUCCUGCUCCUAGUCCUCAUUCUGGACGUUACGUCACUGGACACUUAAUGGUCUGACCAAGGGGACGGGACACAUCGUGGAAACUG ((.((((((((((((((.......((((.......)))).....((((...(((.(.....))))))))...))))))))))))))))..(....).. ( -37.00) >DroYak_CAF1 84019 96 + 1 GACUG--UCCUGUUCCAGCUCCCAGUCCUCAUUCUGGACGUUAAGUUACCGGACAUUUAAUAGUCUGACCAAGGGGACGGGAAACAUCGCGAAAACUG ((...--(((((((((((((....((((.......))))....))))..(((((........)))))......)))))))))....)).......... ( -28.90) >consensus GACUGUGUCCUGUUCCUGCUCCUAGUCCUCAUUCUGGACGUUAGGUUACCGGACACUUAAUGGUCUGACCAAGGGGACGGGACACAUCGUGGAAACUG ((.((((((((((((((.......((((.......))))..........(((((........))))).....))))))))))))))))..(....).. (-29.54 = -30.85 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:33 2006