Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 421,236 – 421,399 |
Length | 163 |
Max. P | 0.906702 |
Location | 421,236 – 421,342 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 89.37 |
Mean single sequence MFE | -40.38 |
Consensus MFE | -31.12 |
Energy contribution | -31.28 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.13 |
Mean z-score | -1.51 |
Structure conservation index | 0.77 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565363 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 421236 106 - 1281640 ---CUGGGUGACCUGACCCUUCAGGGGUUGGUACUACUGCCAAUUGGCUGCGCUUGCGCCUGCGUGGCCCUACACAUGCGUGUAUCUAGAAGCGGGUACACGCAGAAAA ---....(((.(((((....)))))((((((((....))))))))(((..(((........)))..)))...))).(((((((((((......)))))))))))..... ( -46.10) >DroSec_CAF1 38204 106 - 1 ---CUGGGUGACCUGACCCUUCAGGGGUUGGUACUACUGCCAAUUGGCUGCGCUUGCGCGUGCGUUGCCCUACACAUGCGUGUACCUAGCAGCGCCUACACGCAGAAAA ---(((.(((.(((((....)))))((((((((....)))))))).(((((...((((((((.((......)).))))))))......))))).....))).))).... ( -41.90) >DroSim_CAF1 29718 106 - 1 ---CUGGGUGACCUGACCCUUCAGGGGUUGGUACUGCUGCCAAUUGGCUGCGCUUGCGCCUGCGUGGCCCUACACAUGCGUGUACCUAGCAGCGCCUACACGCAGAAAA ---(((.(((....(((((.....)))))((..((((((......(((..(((........)))..))).(((((....)))))..))))))..))..))).))).... ( -45.50) >DroEre_CAF1 48097 108 - 1 GGGCUGGGUGACCUGACCCUUCAGGGGUUGAUACUGCUGCCAAUUGGCUGCGCUUGCGCCUUCGUGACCCUACACAUGUGUGUAUCUAU-CGUGCGUACACCGAGAAAA ...((.((((.(((((....)))))(((.(((((.((.(((....))).))....((((....(((......)))..))))))))).))-).......)))).)).... ( -33.80) >DroYak_CAF1 49473 106 - 1 ---CUGGGUGACCUGACCCUUCAGGGGUUGAUACUGCUGCCAAUUGGCUGCGCUUGCGCCUGCGUGACCUUACACAUGUGUGUAUCUGUGCUUGCGUACACGUAGAAAA ---..((....)).(((((.....)))))....((((.(((....)))(((((..(((((.....)....(((((....)))))...))))..)))))...)))).... ( -34.60) >consensus ___CUGGGUGACCUGACCCUUCAGGGGUUGGUACUGCUGCCAAUUGGCUGCGCUUGCGCCUGCGUGGCCCUACACAUGCGUGUAUCUAGCAGCGCGUACACGCAGAAAA ...(((.(((....(((((.....)))))((((((((.(((....))).)))...((((.((.(((....))).)).)))))))))............))).))).... (-31.12 = -31.28 + 0.16)
Location | 421,305 – 421,399 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 92.95 |
Mean single sequence MFE | -35.25 |
Consensus MFE | -31.46 |
Energy contribution | -31.18 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.08 |
Mean z-score | -1.45 |
Structure conservation index | 0.89 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906702 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 421305 94 - 1281640 UGCCAUCUGGUUCUUUGUCCCCUUAAAACUUGAACGAGGGACUGGACUGGAUUGGGG------CUGGGUGACCUGACCCUUCAGGGGUUGGUACUACUGC ..(((((..((((...((((((.............).))))).))))..)).))).(------(..((((.((.(((((.....)))))))))))...)) ( -33.22) >DroSec_CAF1 38273 94 - 1 UGCCAUCUGGUUCUUUGUCCCCUUGAAACUUGAACGAGGGACUGGACUAGAUUGGGG------CUGGGUGACCUGACCCUUCAGGGGUUGGUACUACUGC ..(((((((((((...(((((.(((.........)))))))).)))))))).))).(------(..((((.((.(((((.....)))))))))))...)) ( -35.80) >DroSim_CAF1 29787 94 - 1 UGCCAUCUGGUUCUUUGUCCCCUUGAAACUUGAACGAGGGACUGGACUAGAUUGGGG------CUGGGUGACCUGACCCUUCAGGGGUUGGUACUGCUGC ..(((((((((((...(((((.(((.........)))))))).)))))))).)))((------(.((...(((.(((((.....)))))))).))))).. ( -36.40) >DroEre_CAF1 48165 100 - 1 UGCCAUCUGGUUCUUUGUCCCCUUGAAACUUGAACGCGGGACUGGACCGGAUUGGGGCUGGGGCUGGGUGACCUGACCCUUCAGGGGUUGAUACUGCUGC .((((((((((((...((((((.............).))))).)))))))))...))).(((((.((....)).).)))).(((.(((....))).))). ( -39.52) >DroYak_CAF1 49542 94 - 1 UGCCAUCUGGUUCUUUGUCCCCUUGAAACUUAAAUGAGGAACUGGACCGGAUUGGGG------CUGGGUGACCUGACCCUUCAGGGGUUGAUACUGCUGC ..(((((((((((...((..((((...........)))).)).)))))))).)))((------(.((....)).(((((.....)))))......))).. ( -31.30) >consensus UGCCAUCUGGUUCUUUGUCCCCUUGAAACUUGAACGAGGGACUGGACUGGAUUGGGG______CUGGGUGACCUGACCCUUCAGGGGUUGGUACUGCUGC ..(((((((((((...((((((.............).))))).)))))))).)))..........((....)).(((((.....)))))........... (-31.46 = -31.18 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:31 2006