Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 419,010 – 419,119 |
Length | 109 |
Max. P | 0.540575 |
Location | 419,010 – 419,119 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.81 |
Mean single sequence MFE | -23.78 |
Consensus MFE | -13.20 |
Energy contribution | -13.12 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.22 |
Mean z-score | -2.04 |
Structure conservation index | 0.55 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.540575 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 419010 109 - 1281640 ---AUUCGCAUAA---CUUAUUUAAUGUAUACACAUAAGUAGGCGCAUGAGUAUAUGGACG-CA---AAAACAGAUGCGGAGCUGCAUUCUUUGUACUU-AGCAUUUAUUUAUGACAAAA ---....((((..---........)))).....((((((((((.((.((((((((.(((..-..---.......(((((....)))))))).)))))))-))).))))))))))...... ( -22.80) >DroSec_CAF1 35902 113 - 1 AAUAUUCGUAUAA---CUUAUUUAAUGUAUACACAUAAGUAGGCGCAUGAGUAUAUGCACACCA---AAAACAGAUGCGGAGCUGCAUUCUUCGUACUU-AGCAAUUAUUUAUGACAAAA .......(((((.---(.........)))))).(((((((((..((.(((((((((((((.((.---...........)).).))))).....))))))-)))..)))))))))...... ( -22.50) >DroSim_CAF1 27417 112 - 1 AAUAUUCGUAUAA---CUUAUUUAAUGUAUACACAUAAGUAGGCGCAUGAGUAUAUGCACACCA---AAAACAGAUGCGG-GCUGCAUUCUUUGUACUU-AGCAAUUAUUUAUGACAAAA .......(((((.---(.........)))))).(((((((((..((.((((((((((((..((.---...........))-..))))).....))))))-)))..)))))))))...... ( -23.70) >DroEre_CAF1 45029 115 - 1 AAUAUUCGCAUAAUAACUUAUUUAAUUUAUACACAUAAGUAGGUGCA----CAUAUGCACACCAUC-AACAUAGAUGCGGAGCUGCAUUCUUUGUACUCCAACUAUUAUUUAUGCAAAAG .......((((((..((((((.............))))))(((((((----....)))))..((((-......)))).((((.((((.....))))))))..)).....))))))..... ( -24.92) >DroYak_CAF1 47616 112 - 1 AAUGUUUGUAUAAUACCGUAUACA---UUUACAUAUAAGUAGGUGCA----UAUAUGCACACCAACUAACGCAGAUGCGGAGCUGCAUUCUUUGUACUU-AGCAAUUAUUUAUGCAAAAA ....(((((((((....((((.((---(((((......))))))).)----))).(((...........(((....)))(((.((((.....)))))))-.))).....))))))))).. ( -25.00) >consensus AAUAUUCGUAUAA___CUUAUUUAAUGUAUACACAUAAGUAGGCGCAUGAGUAUAUGCACACCA___AAAACAGAUGCGGAGCUGCAUUCUUUGUACUU_AGCAAUUAUUUAUGACAAAA .................................((((((((.((((((......))))............(((((((((....))))))...)))......))...))))))))...... (-13.20 = -13.12 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:27 2006