Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 413,449 – 413,563 |
Length | 114 |
Max. P | 0.561273 |
Location | 413,449 – 413,563 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 75.37 |
Mean single sequence MFE | -17.12 |
Consensus MFE | -13.50 |
Energy contribution | -12.75 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.29 |
Mean z-score | -1.21 |
Structure conservation index | 0.79 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.561273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 413449 114 - 1281640 UGCAUAUAGACAGUCACUGUAUUCUUCCAACAAAAAAAACCUCGUAAAGAGGUAAAAGCAACCGAAAUACGCACCAAACCACCAAUUAUACAAAUGGCAGCAAGAUAACAUUUC (((((((((.......))))))....(((.........(((((.....)))))....((...........))......................)))..)))............ ( -14.30) >DroSec_CAF1 30390 110 - 1 UGCAUGCAGACAGUCACUGUAUUUUUCCAACAAAA-AAACCUCGUAAAGAGGUAAAGGCAACCGAAAAACGCACCAAAUCACCAAUUAUUCAAAUGGAAGCAAGA---CAUUUC (((((((((.......))))))..(((((......-..(((((.....)))))...(....)................................))))))))...---...... ( -19.60) >DroEre_CAF1 38498 93 - 1 UGCAUACAGACCGUCACUGUAUUUGUCCAUCAAAA-GAACCUCGUG-AGAGGUAAAAGCAGUCGAAUAACGCAAUAAUUUACCAACUAUUC-------------------AUUU (((((((((.......)))))).............-..(((((...-.)))))....)))...(((((..................)))))-------------------.... ( -18.17) >DroYak_CAF1 41661 113 - 1 UGUAUACAGACAGUCACUGUAUUUGUCCAACAAAA-GAACCUCGUAAAGAGGUAAAAGCGUUCGAAUAACUCAGUAAUUCACCAACUAUUAUAAUGGCAAUAAAAUAAUAUUUC ...((((((.......))))))(((.(((......-..(((((.....)))))..........((((.((...)).))))..............)))))).............. ( -16.40) >consensus UGCAUACAGACAGUCACUGUAUUUGUCCAACAAAA_AAACCUCGUAAAGAGGUAAAAGCAACCGAAAAACGCACCAAAUCACCAACUAUUCAAAUGGCAGCAAGA___CAUUUC (((((((((.......))))))................(((((.....)))))....)))...................................................... (-13.50 = -12.75 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:23 2006