Locus 43

Sequence ID 4_DroMel_CAF1
Location 395,940 – 396,044
Length 104
Max. P 0.641208
window67

overview

Window 7

Location 395,940 – 396,044
Length 104
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 92.45
Mean single sequence MFE -24.70
Consensus MFE -18.84
Energy contribution -19.08
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.73
Structure conservation index 0.76
SVM decision value 0.22
SVM RNA-class probability 0.641208
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 395940 104 + 1281640
AAGUUUUUACAUUUAUUUUUCUGCCGAAAUUGACGGUAGAUGAUAUUGCACAAUAAAUGG---GUUCGUUUUCUAACUUAGGGCAUGACUGCCUAUUUAAACUUACA
(((((........((((..(((((((.......))))))).))))........(((((((---((((((.(((((...))))).))))..))))))))))))))... ( -24.40)
>DroSec_CAF1 13492 106 + 1
AAGUUUUUACAUUUAUUUUU-UGCCGAAAUUGACGGUAGAUGAUAUUGCACAAUGAAUGGGGGGGUCGUUUUCUAACUUAGGGCAUGACUGCCUAUUUAAACUUAGA
((((((...((((((((.((-(((((.......)))))))((......)).))))))))(((.((((((.(((((...))))).)))))).)))....))))))... ( -26.80)
>DroSim_CAF1 6632 107 + 1
AAGUUUUUACAUUUAUUUUUCUGCCGAAAUUGACGGUAGAUGAUAUUGCACAAUGAAUGGGGGGGUCGUUUUCUAACUUAGGGCAUGACUGCCUAUUUAAACUUAGA
((((((...((((((((..(((((((.......)))))))((......)).))))))))(((.((((((.(((((...))))).)))))).)))....))))))... ( -29.40)
>DroEre_CAF1 19680 103 + 1
AAGUUUUUACAUUUAUUUUUCUGCCGACAUUAACGGUAGAUGAUAUUGCACAAUGAAUAG---GGUCGUUUU-UAACUUAGGGCAUCUUUGCCUAUUUAAACUUACA
((((((.......((((..(((((((.......))))))).))))......(((((....---..)))))..-.......(((((....)))))....))))))... ( -20.00)
>DroYak_CAF1 19847 103 + 1
AAGUUUUUACAUUUAUUUUUCUGCCGACAUUGACGGUAGAUGAUAUUGCACAAUGAAUGU---GGUCGUUUU-UAACUUAGGGCAUGUUGGCCUAUUUAAACUUACA
(((((((((((((((((..(((((((.......)))))))((......)).)))))))))---)).......-.......((((......))))....))))))... ( -22.90)
>consensus
AAGUUUUUACAUUUAUUUUUCUGCCGAAAUUGACGGUAGAUGAUAUUGCACAAUGAAUGG___GGUCGUUUUCUAACUUAGGGCAUGACUGCCUAUUUAAACUUACA
((((((...((((((((..(((((((.......)))))))((......)).)))))))).....................((((......))))....))))))... (-18.84 = -19.08 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:19 2006